BAC Information

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BAC

Clone NameMSMg01-152J07
Chromosome4 (Build37)
Map Location 117,447,246 - 117,447,375
singlet/doubletsinglet
Overlap genenone
Upstream geneTesk2, Toe1, Mutyh, Hpdl, LOC625336, LOC100041048, Zswim5, Urod, Hectd3, Eif2b3, Ptch2, 9530048O09Rik, LOC100041324, 4833401D15Rik, Plk3, Best4-ps, LOC625405, Rps8, Kif2c, Gm1661, Tmem53, 4931406I20Rik, LOC100041093, Prnpip1, Dmap1, LOC433749, Klf17
Downstream genePpia-ps4_1138.1, Slc6a9, B4galt2, Atp6v0b, Dph2, Ipo13, Artn, St3gal3, Jmjd2a, Ptprf, Hyi, BC059842, Med8, Elovl1, Cdc20, Mpl, Tie1, LOC545675, LOC666596, 2610528J11Rik, 6330530A05Rik, 1110020C03Rik, Ebna1bp2, LOC100041290, Olfr62, Olfr1343-ps1, Olfr1342, Olfr1341, Olfr1340, Olfr1339, Olfr1338, Olfr1524-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-152J07.T7 (MSMg01no152_j07.b1)MSMg01-152J07.TJ (MSMg01no152_j07.g1)
ACCAG354415AG354416
length736747
length of high quality
(start - end)
131 (82 - 212)94 (78 - 171)
definitionCHROMAT_FILE: MSMg01no152_j07.b1 PHD_FILE: MSMg01no152_j07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:16:42 2005CHROMAT_FILE: MSMg01no152_j07.g1 PHD_FILE: MSMg01no152_j07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:16:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCAATTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGCAGNTA
CGCGGAATTCTCTCTCCNTTCACATCAACACCACCACTTTGTATGTGCGT
GGATGCAGAGGCAAGAGAGCAGCCTCACCTGTCATTACTCAGGAACTATC
TCCTTGGCTGGTTTGAGATAGGATCTTACACTGGGACCTAGGCCTTGCCC
GGGAAGCTGGATCAGCTGGCAGTGGGCCTTAGGAACCTTCAGGTTCAACC
TCCCTAGTGCTGGGGTCTACCATGAGGGATGTCACACACCCCTACTTTTT
TACAGAGGTACTGGGGACCAGACTTGTGTCCTCACGCTTATGTGACAAGC
GCTTTATAGCTGGAGGCTCCCCACCCCCACCCTGTGCCTGACCCTTGATC
TTGATTTCCAACTTCCATAACTATGACGGAATGGCTAGCTGTCTCCTCCT
TTGTTCTTCACAGTCCAGTCTACTTATCTTTACTGATTGACGATCCCCCC
ACTTCTCAGTCACCGCCAAGCGTGGTAAATGCTCCTCAGTCTCTTGCCTG
GTTTCCCCCTGGGTATTATTTGCTTGGTAAACCCCAATCTCTTGTGACTC
TCCGCTCTCTCTTTCCATCCGGTTATTTCTCGCCCTCTTCTCTCCCCGTT
TCCATTTCTATTTCTGACCTCCCCCCTTCTCCTTTTTCCCTTCCCTCTTT
ATCTTTTTCTCTTCCCCCCTTTCTCCTCCCCCTTTT
TCTTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTAGGGGAAGAACAATACAACAGT
GGAGTGTTCCACATCCTTGCTCTCACCCTGAAATGCTAACCCTGGAACCA
GGAGCACCTGCACAAAACTAACAAGGCTGAAGACAGAGTTGATACGCTGG
TGAGGGGTCAGTGCGGACTGCCCTTGAGCTATACAGATAAAGTCAGTGGT
GCACAGAAAGAATAAACTGGGATGCACATGCACACACACACACACACACA
CACATCACCACCTAAGAGTGAATAGAGCCTCAGCATAGTCTTAAAGGGTA
CAGAGGCTTTTGACACATGTGGATATACCATAAAGTGCACCCTTGTGCTA
CCCCAACCAAGATGTCTCAGGCCTATTTCTGCAACCCACACCACCCTCCA
TTGGCTAACATCATTACCGTCTACATATAATTATGTCCGAGCCCCTCTGT
ACCCTGGGGCTCAGGATATCCCACCTTTTACACTCTTACCCCTTTTTCTT
TACACAGGCTTTGACAGACTCCTGACCGTACCTCCTTGTCCCCCTATCTC
CCCTTTCTTTTACCATCATTTATATCACCACACCGCCCTTCTTTTGCCCC
TTAGCCCTGTCTACCATTCTGCGTTTAAAGGTCTATCCCATTTCTCTTAC
TGGTCTTCTTATTACCCCAACGTTTTTTCCTCCTTCTCTCTTTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no152_j07.b1 MSMg01no152_j07.b1 CHROMAT_FILE:
MSMg01no152_j07.b1 PHD_FILE: MSMg01no152_j07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:16:42 2005
         (131 letters)



>mm_chr4_117447046_117447576
          Length = 531

 Score =  252 bits (130), Expect = 9e-72
 Identities = 130/130 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   caccactttgtatgtgcgtggatgcagaggcaagagagcagcctcacctgtcattactca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caccactttgtatgtgcgtggatgcagaggcaagagagcagcctcacctgtcattactca 260

                                                                       
Query: 61  ggaactatctccttggctggtttgagataggatcttacactgggacctaggccttgcccg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggaactatctccttggctggtttgagataggatcttacactgggacctaggccttgcccg 320

                     
Query: 121 ggaagctgga 130
           ||||||||||
Sbjct: 321 ggaagctgga 330


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 131
Length of database: 531
Length adjustment: 8
Effective length of query: 123
Effective length of database: 523
Effective search space:    64329
Effective search space used:    64329
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)