BAC Information

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BAC

Clone NameMSMg01-152K10
Chromosome4 (Build37)
Map Location 45,059,346 - 45,059,798
singlet/doubletsinglet
Overlap geneFbxo10
Upstream geneGne, LOC100040313, OTTMUSG00000007209, Rnf38, Melk, Pax5, 5730488B01Rik, LOC545618, Zcchc7, D4Wsu132e, Grhpr, Zbtb5, 1700055D18Rik, Polr1e
Downstream gene1110019J04Rik, Frmpd1, Rg9mtd3, Exosc3, LOC666325, Wdr32, Mcart1, Shb, LOC100040140, LOC100040557, Gm829, LOC100040567, LOC100040580, Aldh1b1, Igfbpl1, 1300002K09Rik, Tdrd7, Tmod1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-152K10.T7 (MSMg01no152_k10.b1)MSMg01-152K10.TJ (MSMg01no152_k10.g1)
ACCAG354469AG354470
length962691
length of high quality
(start - end)
87 (129 - 215)445 (45 - 489)
definitionCHROMAT_FILE: MSMg01no152_k10.b1 PHD_FILE: MSMg01no152_k10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:16:48 2005CHROMAT_FILE: MSMg01no152_k10.g1 PHD_FILE: MSMg01no152_k10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:16:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTTTTTTTCCTTTCTTACCTNTTCTTTTATCCCAACCTTTCCGTCCTCCT
TTTTCTCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAAGAGGAG
CCGCGGAATTCTTCAAGATGACACCCTCACTTTGTTTTATATCTTCCCTT
TGCCCCCTGATCCCAGTTTACAGAGAGGGCAACACTCAGTCCTAGAGAAA
AGAAGAGGAGAGGACGGGAGCAGAGATGGGGGGTAGCTCTCTCCTCTCTA
CCCCTCTCACCTTCCCCTTTCCCTACACTCTCCTTAATATAAGACAGCGT
CTATTTTCCCCCCCTCCCTTCCCTTTCCCCACTTCTCCTTTCATTTCTAC
CTCCCATCCTCCTTTCCCTCCTTTTTTTTCCTTTTTTTTTTTTTCTACCC
CCGCTACACACCACCCTACCTCCCCCCTCCCACTATCTCATCACTCCTTT
TTTTTTTCCCCACCCCATCTAACAAAACTCCGAACCCTTAATCCCCATTT
TGTAAGTTTTGTTTTATATCCGTTACTTCTCTCTTCTCTACACGTCCCGT
TGTCCTTTCACCCCCTTCCTCTTATTATTTTTATAATTACCTACCCCCAC
CCCCCCTCTCTCCCTTTCAACCTCTATCTCACCACCCTTCACCGTAACTG
CACTTTTTATCCCTCTCTTCCACCTTTTTTACCTACTTTTTCTTCTCTTT
CAAACCTTGCCCTTTATACTCTCACTTTCCCTGATTTCTGAGCTCTATCC
AACATTCCTAAACTCCCTGCTCCCCGCCCTATTATACCTCTTCCCCCCTC
CCCCGCTCTATACCCACCCAATTCTCTCCACTATCCATACATCTTTTCCT
TCTTGTACACAATACCCTTCCAACTCTATTCCCCTCACCCCCTCACCCTT
ATATTTCCCTTCCCCATCTTCACCCACCTCCCCCTCTTTACTTCCTCTAT
TCCCCTTCTCTC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGC
AATTCTTCATGCTGCCAAGACTTGCCCCATGACGCATGCGCCTTGGTGAC
ATTTGTGTAAATGTCTCTGTGTTGACTGATACAGTCCAGAAAAGCCATAG
AGAGTTGGATAGTGTTGTGCTTATGTCCCAGAGTCGTGAGTCCCAGGGAC
AGCCAAGGGTTTCCAAGTGCCTAGATTATGGGATTTCAGAAGGTGGCTGT
TCCCCGTGAACTTGGGCTACTGGGAAGCTTACTAAGGAAGGCAGCGGGGG
CCAGCGTGATGGGTCTGTGGGTAAAAGCACTTGCTTTGTAAGCCTGACAA
CCTGAGCTGATCCCTGGAACCCGTAGTGGAAGGACAGGACCAACTCCCGA
TAGTTGTGCTCTGACCTCCACATGTATGCTGTAGCACATGTCACACACAC
ACACACACCATTTTTAAATGTTTTAAAGGAAGACACCTAAACCATGACAT
AGGTGCCTCGGTCTCATGTCTTTCCCTGTCTCTTCTGTCTTAGCGGAAAC
CACATCTTCAAGGGGCGCGTAGCTGGTATAGCAGCGAACGAGAATGTCAA
AGGCCTCATCACAGGTATATGATAGGGACTGCTGGAGCTACAGCCAGCCT
AGGCAGTTGGCAGTCAAGCTCACATCCCTTGTGATCAGGGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no152_k10.g1 MSMg01no152_k10.g1 CHROMAT_FILE:
MSMg01no152_k10.g1 PHD_FILE: MSMg01no152_k10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:16:48 2005
         (445 letters)



>mm_chr4_45059346_45060191
          Length = 846

 Score =  756 bits (391), Expect = 0.0
 Identities = 429/453 (94%), Gaps = 19/453 (4%)
 Strand = Plus / Minus

                                                                       
Query: 7   aattcttcatgctgccaagacttgccccatgacgcatgcgccttggtgacatttgtgtaa 66
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 aattcttcatgctgccaagacttgccccatgacgcatgcgccttggtgacatttgtgtaa 394

                                                                       
Query: 67  atgtctctgtgttgactgatacagtccag-aaaagccatagagagttggatagtgttgtg 125
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 393 atgtctctgtgttgactgatacagtccagaaaaagccatagagagttggatagtgttgtg 334

                                                                       
Query: 126 cttatgtcccagagtcgtgagtcccagggacagccaagggtttccaagtgcctagattat 185
           |||||||||||||||  ||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 333 cttatgtcccagagttatgagtcccagggacagccaagggtttccaagtgtctagattat 274

                                                                       
Query: 186 gggatttcagaaggtggctgttccccgtgaacttgggctactgggaagcttactaaggaa 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 gggatttcagaaggtggctgttccccgtgaacttgggctactgggaagcttactaaggaa 214

                                                                       
Query: 246 ggcagcgggggccagcgtgatgggtctgtgggtaaaagcacttgctttgtaagcctgaca 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 ggcagcgggggccagcgtgatgggtctgtgggtaaaagcacttgctttgtaagcctgaca 154

                                                                       
Query: 306 acctgagctgatccctggaacccgtagtggaaggacaggaccaactcccgatagttgtgc 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 153 acctgagctgatccctggaacccgtagtggaaggacaggaccaactcccgacagttgtgc 94

                                                                       
Query: 366 tctgacctccacatgtatgctgtagcacatgtc------------------acacacaca 407
           |||||||||||| ||||||||||||||||||||                  |||||||||
Sbjct: 93  tctgacctccacgtgtatgctgtagcacatgtctctcacacacacacacacacacacaca 34

                                            
Query: 408 cacacaccatttttaaatgttttaaaggaagac 440
           |||||||||||||||||||||||||||||||||
Sbjct: 33  cacacaccatttttaaatgttttaaaggaagac 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 445
Length of database: 846
Length adjustment: 10
Effective length of query: 435
Effective length of database: 836
Effective search space:   363660
Effective search space used:   363660
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)