BAC Information

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BAC

Clone NameMSMg01-152M08
Chromosome4 (Build37)
Map Location 92,715,942 - 92,716,564
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC664886, 1700011H22Rik, LOC68280
Downstream geneLOC620269, LOC384125, Tusc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-152M08.T7 (MSMg01no152_m08.b1)MSMg01-152M08.TJ (MSMg01no152_m08.g1)
ACCAG354557AG354558
length779732
length of high quality
(start - end)
34 (263 - 296)622 (76 - 697)
definitionCHROMAT_FILE: MSMg01no152_m08.b1 PHD_FILE: MSMg01no152_m08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:16:58 2005CHROMAT_FILE: MSMg01no152_m08.g1 PHD_FILE: MSMg01no152_m08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:16:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCTCCTCCCTTAAATACCCCCCTTACTCTCTCCCCCCCCCCCCCTCCCC
TNNCACCTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXA
CCGCGGAATCATTCTGTACACCAGCCTGGCCTTGAACTCAGAAATCTGCC
TGCCTCTACCTCGCAAGTGCTGGAATTAAAGGXXXXXXXXXXXXXXXXXX
GGCTATTCTTTATTCTTGAACCAAATCTGAGCTATATGTGCCCAGTGAAT
ATGGATTCAGGTTACTTGAACTAATATATCTAATTATAGAAATGCCAGAA
AAGGAAAATATGAATCAAGACATTTCTCAAATGCCTTGACGAACCCATCC
ACTAGATGGCTTACAAAAAGTATAGAAGTGTCTGCTACCAGCTTCAATTC
TGCTTAATAATATTTCTAATGCCCGTATTGACGACCGCCCCCTAACTTAT
TACACCTCCCAAAGCCATTATCATATTATCCTAAGGATGATGCTACAGAC
ACTCCTAAACTTTACACTCCTAGGAAGCGCCGACCCCACCCCTGCCCACA
CACAACTCCCCACACCAATGCCATTCTTCATTTTTGCTCCGTATTCACTT
CACTTGCGTTGAAACAGCACACCATGCTAGAACGCCCTTCCCGCCCTCAA
CTTCCCCGGCCCCCTTACCACCGGCTGCAATTCTACCCTTCTAATTGCAC
CCACTCGCCCTATCCCCCCCCCCCCCCCCTATTCACGCCCCTTTCCCCGC
CCCCCACCTGTCTCCCCACCGCTTGCTCT
CCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATGACTCTCTATGAAGTCATGACAA
GTGAAGATCAATGAAAACTAGTGAAGGGTTGCAAGGTGAACGAATATGCA
AGAGCATTTTTCACTGCTTACCATGCTCTAATTATAGTCTTTCCAAATAT
CATGTGTCTCTCAAGTGTTTGCTTCAGAAAAACATCCTCTTACAAGAAAA
TTTTCAGAAAAACATCACATGACACAACTGAAGGTACCTGTGTAGCCTCA
AGCAAAACTTTGGAGGTAACTTGGCTGAGCACTAACCCAAAGAAATAAGA
AATTTCCACTTCATAAGTTTCTCAACCTCCAGAATATATTGTGTATAAAA
CTCTCTGTCTCTCCAGTTCATTTTGTAGCTCATGGGGAGCAATTCTCCTA
TATCAGCCTCTTAAGTGATGGGATTACAGATGTAAGCTACTATACTTTCC
TCTTTTTCTCCTTTTTAATGTGCTTCTGGTAACACTTATGTCATTTGTTC
ATCAAATTTGTATATAAATCCATTTTACAGTTAAATCTTACCTTTAGAAT
AGCCTTTTAATTTAGTGAGTCTAANAATATTTGAAAATAAAGCTTCTACT
TATATCATGTACATATGACTAGCTAAATATCTGCTATAAAGAAAAAGTAC
TGCAGCGATGTTTAACTATTCTTTTATTATTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no152_m08.g1 MSMg01no152_m08.g1 CHROMAT_FILE:
MSMg01no152_m08.g1 PHD_FILE: MSMg01no152_m08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:16:58 2005
         (622 letters)



>mm_chr4_92715743_92716764
          Length = 1022

 Score = 1183 bits (612), Expect = 0.0
 Identities = 620/623 (99%), Gaps = 1/623 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgactctctatgaagtcatgacaagtgaagatcaatgaaaactagtgaagggttgcaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 atgactctctatgaagtcatgacaagtgaagatcaatgaaaactagtgaagggttgcaag 259

                                                                       
Query: 61  gtgaacgaatatgcaagagcatttttcactgcttaccatgctctaattatagtctttcca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 gtgaacgaatatgcaagagcatttttcactgcttaccatgctctaattatagtctttcca 319

                                                                       
Query: 121 aatatcatgtgtc-tctcaagtgtttgcttcagaaaaacatcctcttacaagaaaatttt 179
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 aatatcatgtgtcctctcaagtgtttgcttcagaaaaacatcctcttacaagaaaatttt 379

                                                                       
Query: 180 cagaaaaacatcacatgacacaactgaaggtacctgtgtagcctcaagcaaaactttgga 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 cagaaaaacatcacatgacacaactgaaggtacctgtgtagcctcaagcaaaactttgga 439

                                                                       
Query: 240 ggtaacttggctgagcactaacccaaagaaataagaaatttccacttcataagtttctca 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ggtaacttggctgagcactaacccaaagaaataagaaatttccacttcataagtttctca 499

                                                                       
Query: 300 acctccagaatatattgtgtataaaactctctgtctctccagttcattttgtagctcatg 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 acctccagaatatattgtgtataaaactctctgtctctccagttcattttgtagctcatg 559

                                                                       
Query: 360 gggagcaattctcctatatcagcctcttaagtgatgggattacagatgtaagctactata 419
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 560 gggagcaattctcctatatcaggctcttaagtgatgggattacagatgtaagctactata 619

                                                                       
Query: 420 ctttcctctttttctcctttttaatgtgcttctggtaacacttatgtcatttgttcatca 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ctttcctctttttctcctttttaatgtgcttctggtaacacttatgtcatttgttcatca 679

                                                                       
Query: 480 aatttgtatataaatccattttacagttaaatcttacctttagaatagccttttaattta 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 aatttgtatataaatccattttacagttaaatcttacctttagaatagccttttaattta 739

                                                                       
Query: 540 gtgagtctaanaatatttgaaaataaagcttctacttatatcatgtacatatgactagct 599
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 gtgagtctaaaaatatttgaaaataaagcttctacttatatcatgtacatatgactagct 799

                                  
Query: 600 aaatatctgctataaagaaaaag 622
           |||||||||||||||||||||||
Sbjct: 800 aaatatctgctataaagaaaaag 822


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 622
Length of database: 1022
Length adjustment: 10
Effective length of query: 612
Effective length of database: 1012
Effective search space:   619344
Effective search space used:   619344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)