BAC Information

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BAC

Clone NameMSMg01-152P06
Chromosome4 (Build37)
Map Location 109,444,329 - 109,555,957
singlet/doubletdoublet
Overlap geneFaf1
Upstream gene3110021N24Rik, Btf3l4, Txndc12, Kti12, Rab3b, Nrd1, Osbpl9, Calr4, Eps15, LOC666144, 4922503N01Rik, Rnf11, 4930522H14Rik, Cdkn2c, LOC100040307
Downstream geneDmrta2, Elavl4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-152P06.T7 (MSMg01no152_p06.b1)MSMg01-152P06.TJ (MSMg01no152_p06.g1)
ACCAG354686AG354687
length726727
length of high quality
(start - end)
389 (51 - 439)554 (81 - 634)
definitionCHROMAT_FILE: MSMg01no152_p06.b1 PHD_FILE: MSMg01no152_p06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:17:12 2005CHROMAT_FILE: MSMg01no152_p06.g1 PHD_FILE: MSMg01no152_p06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:17:12 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(109,444,329 - 109,444,712)(109,555,404 - 109,555,957)
sequence
CCTCTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTTTTATCTTACTTTTCTCTTATCTTGCCATGGCATCTATG
AGATTATAGTCATGATCTTCAGTAGGCTCTGGGAATCCAAACTCAAGTCC
ACACACCTACAGAACATCACTTTACCTGCTGAGCCATCTTCCCAGCTCCT
AAAATACATTTTAATTCTACCTTTAAGTCATTGCAATTTTAATTTTTTTT
CTAAGACATCCTCTATATCTATAATTGTGTGTGTTTTAGTAAACTGTTTT
CTGACAATTCTGTGTGATATTTATTGTCATCTAAATTTAAAATAATTTAT
AATTTAAAAAAATTTTGAAAAGATAAACATGTTTAAATCTTAACACCGAA
GTGTTAAGTACTACAGATAGCAAGCTACTTTGAAATTGCGCTTTGTGTCT
TATATACAATATTTACAGTTGACCAGACTATTGGAAATCCCTGTCCAAAA
ACCAAATATCTAATATGTATTAAATATGTAATTAATCTACAATCTACTAT
CATAAGCAGAGTTAAATACACATCAATGAGCAACATAATTTTTAAGTTTA
TTGTCTTCTTATTTCAGCCATTAGATTGAATACTTTCTTGGAAAGATTAA
GACAGAAAATATTGGGCATGCCTTTTCCTTAGCTTTATTGAACGAACAAA
AACATCCACACAGTTCCAATTAAGGA
TTTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTAACTAGGATAAATGACA
GAGTGTGGTACAAAGGAGGCTGACTAGTATCATTCTAAAATAGATTTAGC
AACATTTCCCTAAGTCCTTAGAATCAAGATCTACATGGAAGCACTATGTT
TCCTCTAGAAGTAGTGGTCTTCTAGTTTTGTATTTAGTATGGAATAAAAG
CAATTCTAAGCTTTTGGCCAAAAAAGCTCAGAGATATTAGCATACTGAAG
TCTAGCATTAGTATTCTTAACACGATCTGTAATAAATGAAAAAACTGATA
AAGCTTTTCTCTTCTATTAGAGGACTGTTTGAAATTAGCATTTCTTTCAA
GAGAAAAGGGTAGCTTATGATATGTTTTCAGATCTGATGGTAAAAAGTAA
ATGTCATAATAATAATGAATTATGACAGACCAAATGCAAATATAGAATGC
TTTAATAAGATCCAATTTAATAAAGTCTGTAAAAATAATGGACTTTTAAT
AACACAGGTCACAAAAGGCAAAACAGTGGAAATTCTGGAGACTAGCCACT
GGTACTAGCTTATTAATTCTTAATTATGTTCATGACAGGCAACTTAAATC
GTGCGCTTTCTTATGCCTTATGATAATATTTTAGGTAACAACTCCTCTGA
AATGTATGTTCTAGCTGATGAGCACAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no152_p06.b1 MSMg01no152_p06.b1 CHROMAT_FILE:
MSMg01no152_p06.b1 PHD_FILE: MSMg01no152_p06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:17:12 2005
         (389 letters)



>mm_chr4_109444125_109444913
          Length = 789

 Score =  727 bits (376), Expect = 0.0
 Identities = 382/384 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttttatcttacttttctcttatcttgccatggcatctatgagattatagtcatg 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttttatcttatttttctcttatcttgccatggcatctatgagattatagtcatg 264

                                                                       
Query: 65  atcttcagtaggctctgggaatccaaactcaagtccacacacctacagaacatcacttta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atcttcagtaggctctgggaatccaaactcaagtccacacacctacagaacatcacttta 324

                                                                       
Query: 125 cctgctgagccatcttcccagctcctaaaatacattttaattctacctttaagtcattgc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cctgctgagccatcttcccagctcctaaaatacattttaattctacctttaagtcattgc 384

                                                                       
Query: 185 aattttaattttttttctaagacatcctctatatctataattgtgtgtgttttagtaaac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aattttaattttttttctaagacatcctctatatctataattgtgtgtgttttagtaaac 444

                                                                       
Query: 245 tgttttctgacaattctgtgtgatatttattgtcatctaaatttaaaataatttataatt 304
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 445 tgttttctgacaattctgtgtgatatctattgtcatctaaatttaaaataatttataatt 504

                                                                       
Query: 305 taaaaaaattttgaaaagataaacatgtttaaatcttaacaccgaagtgttaagtactac 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 taaaaaaattttgaaaagataaacatgtttaaatcttaacaccgaagtgttaagtactac 564

                                   
Query: 365 agatagcaagctactttgaaattg 388
           ||||||||||||||||||||||||
Sbjct: 565 agatagcaagctactttgaaattg 588


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 389
Length of database: 789
Length adjustment: 9
Effective length of query: 380
Effective length of database: 780
Effective search space:   296400
Effective search space used:   296400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no152_p06.g1 MSMg01no152_p06.g1 CHROMAT_FILE:
MSMg01no152_p06.g1 PHD_FILE: MSMg01no152_p06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:17:12 2005
         (554 letters)



>mm_chr4_109555204_109556157
          Length = 954

 Score = 1056 bits (546), Expect = 0.0
 Identities = 552/554 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttaactaggataaatgacagagtgtggtacaaaggaggctgactagtatcattctaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 754 cttaactaggataaatgacagagtgtggtacaaaggaggctgactagtatcattctaaaa 695

                                                                       
Query: 61  tagatttagcaacatttccctaagtccttagaatcaagatctacatggaagcactatgtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 tagatttagcaacatttccctaagtccttagaatcaagatctacatggaagcactatgtt 635

                                                                       
Query: 121 tcctctagaagtagtggtcttctagttttgtatttagtatggaataaaagcaattctaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 tcctctagaagtagtggtcttctagttttgtatttagtatggaataaaagcaattctaag 575

                                                                       
Query: 181 cttttggccaaaaaagctcagagatattagcatactgaagtctagcattagtattcttaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 cttttggccaaaaaagctcagagatattagcatactgaagtctagcattagtattcttaa 515

                                                                       
Query: 241 cacgatctgtaataaatgaaaaaactgataaagcttttctcttctattagaggactgttt 300
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 cacgatctggaataaatgaaaaaactgataaagcttttctcttctattagaggactgttt 455

                                                                       
Query: 301 gaaattagcatttctttcaagagaaaagggtagcttatgatatgttttcagatctgatgg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 gaaattagcatttctttcaagagaaaagggtagcttatgatatgttttcagatctgatgg 395

                                                                       
Query: 361 taaaaagtaaatgtcataataataatgaattatgacagaccaaatgcaaatatagaatgc 420
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 394 taaaaagtaaatgtcataataataatgaattatgaaagaccaaatgcaaatatagaatgc 335

                                                                       
Query: 421 tttaataagatccaatttaataaagtctgtaaaaataatggacttttaataacacaggtc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tttaataagatccaatttaataaagtctgtaaaaataatggacttttaataacacaggtc 275

                                                                       
Query: 481 acaaaaggcaaaacagtggaaattctggagactagccactggtactagcttattaattct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 acaaaaggcaaaacagtggaaattctggagactagccactggtactagcttattaattct 215

                         
Query: 541 taattatgttcatg 554
           ||||||||||||||
Sbjct: 214 taattatgttcatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 954
Length adjustment: 10
Effective length of query: 544
Effective length of database: 944
Effective search space:   513536
Effective search space used:   513536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)