BAC Information

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BAC

Clone NameMSMg01-153A22
Chromosome4 (Build37)
Map Location 129,747,816 - 129,748,370
singlet/doubletsinglet
Overlap geneCol16a1
Upstream geneIbrdc3, Tmem54, Hpca, Fndc5, S100pbp, Yars, C77080, Sync, Rbbp4, Zbtb8os, 2410081M15Rik, LOC100039588, Zbtb8, Bsdc1, Tssk3, 1700125D06Rik, Marcksl1, Hdac1, Lck, BC030183, Eif3s2, 2510006D16Rik, LOC667452, Iqcc, Ccdc28b, Txlna, Kpna6, Tmem39b, Khdrbs1, LOC100040532, Ptp4a2, LOC622469, LOC622480, 1700003M07Rik, Bai2
Downstream genePef1, Hcrtr1, Tinagl, Gm853, Serinc2, Fabp3, Zcchc17, Wdr57, 2610200G18Rik, Pum1, LOC622577, Sdc3, Laptm5, Matn1, LOC622681, LOC100041575
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-153A22.T7 (MSMg01no153_a22.b1)MSMg01-153A22.TJ (MSMg01no153_a22.g1)
ACCAG354763AG354764
length709717
length of high quality
(start - end)
558 (41 - 598)144 (72 - 215)
definitionCHROMAT_FILE: MSMg01no153_a22.b1 PHD_FILE: MSMg01no153_a22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:17:21 2005CHROMAT_FILE: MSMg01no153_a22.g1 PHD_FILE: MSMg01no153_a22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:17:21 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CTGCCCCCCTAACCCCCCCCCCCGCCCCCATAGGCTTTGGCACCACCAGG
CAGATTCTATCAATGTTCTCCAAACTCAAACAACAATTGCTCTAGGGATC
TACAAAGGATAGGGAAAGGATAGGCTCACTGGGCTATTTTCAACATTACC
AAAAGCTCAAGAAAAATTATACATTTGCCCAGGGCCCAGCATGGCACGGG
CTGGCTGAAAGGTGGCATTTCTTTGATTCAGGCTAAAATTATCATTTTGT
AAAATTCTAGTGGCTTCACGTGGAGTAGAAGCTGACTATTAGACAGGTCT
TTGATGACTAAAATGAGAAAATGCACTTATTATTACCTAATCTATGCAAT
TTGCTCAATAGACACATCTGTTAAGCATGGAGTCATTGTCTTGGGCAGAC
TGGAATAAAACGTTTCTATTCCCTCAGACACTCAGTGCATGGTCCCGATG
GGCTCCAGGGTTTTACAGTAAGGGATGGGCTTCAAATTCCCAGCTCCATC
CTCTACTCTCTGGTCTTTGCTCTCCCTGTGTATGGATATGAAAAACCCCA
GCAGCCCCTAGCTCATACCCGCAACCCCAGTACTTATGAAGCAGAGAGCA
CACGGTTGCCATTAGTTCAGTACGAGCCTGGACTACACAGCTGAGTTCCA
GTTAAGTCT
GATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXATCAAAGGCAGAGGGTGGTGCTGGGCAGACTTC
ACATTTTACTTTGCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCCCTTCCTTCTCCCTC
CTCCTCCTATTTATTTATTGATTTATTTATTTAGTTGGCGTTTTTTTTTT
GAGACAGGGTTTCTCTTGTATAGCCCTGGTTGTTCTGGAACTCACTTTGT
AGAGGAGGGTGGCCTGAAATTTTTATATCCGCTTGCCTCTGCCTCCCGAG
TGTTGGGATTAAAGGTATGGGCCACCATGCCGAATACATTTTATTTTTAG
AGATGAGAATAGATTTCCAAACTTAAAATTGGGTGGAGGGGGGAAAGAAC
ACTAAAAAATGTCATCACATGTGGGATCAAGAGCTACTTAATCATATACT
TATTACATATATAATCAATCACTGAATTATACTATTATCCTTAGATATCA
TTAATTAACAGATTTATGTGACATTAAGTGCCATATCCCTTGGTTTTTTA
CACTTTACTAGCCACGTGTTACGGGTATGGGTATTGCCACTCATAACTAT
GAATTCATGTTAAAAAAATCTGTCATTAGCAAAATCTTCAAAGTTTTACA
AATTATAGGGTTGGAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no153_a22.b1 MSMg01no153_a22.b1 CHROMAT_FILE:
MSMg01no153_a22.b1 PHD_FILE: MSMg01no153_a22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:17:21 2005
         (558 letters)



>mm_chr4_129747612_129748570
          Length = 959

 Score = 1042 bits (539), Expect = 0.0
 Identities = 551/555 (99%), Gaps = 1/555 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctgcccccctaa-cccccccccccgcccccataggctttggcaccaccaggcag 63
           |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 759 gaattcctgcccgcctaaccccccccccccgcccccataggctttggcaccaccaggcag 700

                                                                       
Query: 64  attctatcaatgttctccaaactcaaacaacaattgctctagggatctacaaaggatagg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 attctatcaatgttctccaaactcaaacaacaattgctctagggatctacaaaggatagg 640

                                                                       
Query: 124 gaaaggataggctcactgggctattttcaacattaccaaaagctcaagaaaaattataca 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 gaaaggataggctcactgggctattttcaacattaccaaaagctcaagaaaaattataca 580

                                                                       
Query: 184 tttgcccagggcccagcatggcacgggctggctgaaaggtggcatttctttgattcaggc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 tttgcccagggcccagcatggcacgggctggctgaaaggtggcatttctttgattcaggc 520

                                                                       
Query: 244 taaaattatcattttgtaaaattctagtggcttcacgtggagtagaagctgactattaga 303
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 519 taaaattatcattttgtaaaattctagtgggttcacgtggagtagaagctgactattaga 460

                                                                       
Query: 304 caggtctttgatgactaaaatgagaaaatgcacttattattacctaatctatgcaatttg 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 caggtctttgatgactaaaatgagaaaatgcacttattattacctaatctatgcaatttg 400

                                                                       
Query: 364 ctcaatagacacatctgttaagcatggagtcattgtcttgggcagactggaataaaacgt 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 ctcaatagacacatctgttaagcatggagtcattgtcttgggcagactggaataaaacgt 340

                                                                       
Query: 424 ttctattccctcagacactcagtgcatggtcccgatgggctccagggttttacagtaagg 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 ttctattccctcagacactcagtgcatggtcccgatgggctccagggttttacagtaagg 280

                                                                       
Query: 484 gatgggcttcaaattcccagctccatcctctactctctggtctttgctctccctgtgtat 543
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 279 gatgggcttcaaattcccagctccaccctctactctctggtctttgctctccctgtgtat 220

                          
Query: 544 ggatatgaaaaaccc 558
           |||||||||||||||
Sbjct: 219 ggatatgaaaaaccc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 558
Length of database: 959
Length adjustment: 10
Effective length of query: 548
Effective length of database: 949
Effective search space:   520052
Effective search space used:   520052
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)