Query= MSMg01no153_e21.b1 MSMg01no153_e21.b1 CHROMAT_FILE:
MSMg01no153_e21.b1 PHD_FILE: MSMg01no153_e21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:17:39 2005
(688 letters)
>mm_chr4_108321433_108322520
Length = 1088
Score = 1218 bits (630), Expect = 0.0
Identities = 669/684 (97%), Gaps = 6/684 (0%)
Strand = Plus / Plus
Query: 6 gaattccagaccagcgtg-gcctacagagtaagaccctgtctcagggcctaaaagtaaca 64
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 210 gaattccagaccagcgtgag-ctacagagtaagaccctgtctcagggcctaaaagtaaca 268
Query: 65 aatgactttaatgcctttagatttcatcttgaaagacacgagataccattggctgtctcg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 aatgactttaatgcctttagatttcatcttgaaagacacgagataccattggctgtctcg 328
Query: 125 acagagaagtgacatcatgctggcagaacgagagaaggaaactagagacaagggaagcat 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 acagagaagtgacatcatgctggcagaacgagagaaggaaactagagacaagggaa---- 384
Query: 185 gcacttccccagactctgatggggtagcaggggggtgagagccactgtagttggggatgt 244
|||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 385 gcacttgcccagactctgatggggtagcagggtggtgagagccactgtagttggggatgt 444
Query: 245 atcctgaagtacagcaaacaagatttactgttaggctaattgtggggtagggaagaaaga 304
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 atcttgaagtacagcaaacaagatttactgttaggctaattgtggggtagggaagaaaga 504
Query: 305 aaagtatcagaaatgaatccaaggtcttggtgtgcagcagcatagagttgccacgaccca 364
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 505 aaagtatcagaaatgaatccaaggtcttggtgtgaagcagcatagagttgccacgaccca 564
Query: 365 gggaagaatttggatttaaagcccaagaagatggtttttagtgagagccttgctgagtct 424
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 565 gggaagaatttggatttaaagcccaagaagatggtttttagtgagagccttcctgagtct 624
Query: 425 tagtttatggttctgacttattcaaatggaatgtattagcaaagatgcttgatacccaaa 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tagtttatggttctgacttattcaaatggaatgtattagcaaagatgcttgatacccaaa 684
Query: 485 aggccacagttctactcaaccaagtttagaagacctgcttttgtttcagtgccttagctt 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 aggccacagttctactcaaccaagtttagaagacctgcttttgtttcagtgccttagctt 744
Query: 545 tccctcaaaaacacactcggtgaccttcacagaccaagttatggggctgaagaagtggct 604
||||||||||| |||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tccctcaaaaatacacacagtgaccttcacagaccaagttatggggctgaagaagtggct 804
Query: 605 cagtggctaaaagcatacacttgctgagaaactgggtttggttcccagtatccacaatag 664
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 cagtggctaaaagcatacgcttgctgagaaactgggtttggttcccagtatccacaatag 864
Query: 665 gtgtttcccaaccacctgtaattc 688
||||||||||||||||||||||||
Sbjct: 865 gtgtttcccaaccacctgtaattc 888
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 688
Length of database: 1088
Length adjustment: 10
Effective length of query: 678
Effective length of database: 1078
Effective search space: 730884
Effective search space used: 730884
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no153_e21.g1 MSMg01no153_e21.g1 CHROMAT_FILE:
MSMg01no153_e21.g1 PHD_FILE: MSMg01no153_e21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:17:39 2005
(440 letters)
>mm_chr4_108440975_108441814
Length = 840
Score = 812 bits (420), Expect = 0.0
Identities = 435/440 (98%)
Strand = Plus / Minus
Query: 1 actgcagaaaccacacctctgctagagcacaaggcaaatcatagatgctgcagacagtcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 actgcagaaaccacacctctgctagagcacaaggcaaatcatagatgctgcagacagtcc 738
Query: 61 aaatcagctccatatccctacacctgggattaaaacaaaccatattcttataatatttct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 aaatcagctccatatccctacacctgggattaaaacaaaccatattcttataatatttct 678
Query: 121 gtgtgttccaagaaaccttaattccaaattgtcactatgtgtaataagataggttcctta 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 gtgtgttccaagaaaccttaattccaaattgtcactatgtgtaataagataggttccttt 618
Query: 181 aaaaaagcaggcactggagtggatttggtagtataaaaagaaattagggggaggaggaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 aaaaaagcaggcactggagtggatttggtagtataaaaagaaattagggggaggaggaat 558
Query: 241 gtaagggaaaggagaaggacctgtcttttatacaaattgccagaatattacactatgaag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 gtaagggaaaggagaaggacctgtcttttatacaaattgccagaatattacactatgaag 498
Query: 301 gagtggatagattctactaccctcctcatggttaggcactgtctacgaactgcccttgac 360
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct: 497 gagtggatagattctactaccctcctcatggttaggcactgtttaggaactgcccttgac 438
Query: 361 aaggatagcctctattgtgaaattcaaacctgctgcagttggaggatgttagctaactat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 aaggatagcctctattgtgaaattcaaacctgctgcagttggaggatgttagctaactat 378
Query: 421 actccttgcccctgcgtggc 440
||||||||| ||||| ||||
Sbjct: 377 actccttgctcctgcatggc 358
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 440
Length of database: 840
Length adjustment: 9
Effective length of query: 431
Effective length of database: 831
Effective search space: 358161
Effective search space used: 358161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
