Query= MSMg01no153_i05.b1 MSMg01no153_i05.b1 CHROMAT_FILE:
MSMg01no153_i05.b1 PHD_FILE: MSMg01no153_i05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:17:54 2005
(660 letters)
>mm_chr4_54534772_54535831
Length = 1060
Score = 1203 bits (622), Expect = 0.0
Identities = 625/626 (99%)
Strand = Plus / Minus
Query: 5 gaattcatgcttactgacccacaaacatggagagtaaggaacattttattttcaagtgtc 64
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 gaattcatgcttacagacccacaaacatggagagtaaggaacattttattttcaagtgtc 567
Query: 65 actgattttcaggttctcatgagtataactttcaggttgttacaaaacttacctgattca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 actgattttcaggttctcatgagtataactttcaggttgttacaaaacttacctgattca 507
Query: 125 gaggtttgagtgccatttttcaattttcttctttctttctctttccctctcatctccaaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 gaggtttgagtgccatttttcaattttcttctttctttctctttccctctcatctccaaa 447
Query: 185 ccgatggtattgtgcattctaggaagatactctatacgtcagcttagcttcatctttatt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 ccgatggtattgtgcattctaggaagatactctatacgtcagcttagcttcatctttatt 387
Query: 245 ttgaataacgttgggcaagattcatcattcataaaatactagacacaatattttgtctac 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 ttgaataacgttgggcaagattcatcattcataaaatactagacacaatattttgtctac 327
Query: 305 taaatctgggcagaaaggaaactgtagagaagtcatgtggaagtatgctgtgaactttga 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 taaatctgggcagaaaggaaactgtagagaagtcatgtggaagtatgctgtgaactttga 267
Query: 365 atggtttttacgaatagagagtgattttgttgaagattcttcaaatacattttttcctgt 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 atggtttttacgaatagagagtgattttgttgaagattcttcaaatacattttttcctgt 207
Query: 425 ttttcttagcactcccagcactgtctggcacatagtagacaatcaataagaattggttgc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 ttttcttagcactcccagcactgtctggcacatagtagacaatcaataagaattggttgc 147
Query: 485 tggtggttgtctggtaaatgagaacctcaatatgggaaccaattctccaaggaaatagga 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146 tggtggttgtctggtaaatgagaacctcaatatgggaaccaattctccaaggaaatagga 87
Query: 545 gaggacttgaaagagtacgcatattttttctcattaggaaggtcatttagaaagtgcatg 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86 gaggacttgaaagagtacgcatattttttctcattaggaaggtcatttagaaagtgcatg 27
Query: 605 caaagaaaatttaaaaatacttcata 630
||||||||||||||||||||||||||
Sbjct: 26 caaagaaaatttaaaaatacttcata 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 660
Length of database: 1060
Length adjustment: 10
Effective length of query: 650
Effective length of database: 1050
Effective search space: 682500
Effective search space used: 682500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no153_i05.g1 MSMg01no153_i05.g1 CHROMAT_FILE:
MSMg01no153_i05.g1 PHD_FILE: MSMg01no153_i05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:17:54 2005
(497 letters)
>mm_chr4_54436914_54437810
Length = 897
Score = 926 bits (479), Expect = 0.0
Identities = 497/509 (97%), Gaps = 12/509 (2%)
Strand = Plus / Plus
Query: 1 cagactacggcatgcagtctacctctgtcttaacataggtgctatatacaacaaatactt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 cagactacggcatgcagtctacctctgtcttaacataggtgctatatacaacaaatactt 248
Query: 61 gattttgctgttgtttccagtttatctgttacatggagttaataagctcagttcattgga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 gattttgctgttgtttccagtttatctgttacatggagttaataagctcagttcattgga 308
Query: 121 ttgttgtgaaggtaagatcaaataacctttatgtatgtatg------tatatatatatat 174
||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 309 ttgttgtgaaggtaagatcaaataacctttatgtatgtatgtatatatatatatatatat 368
Query: 175 atatatatatatatatatatata--cacatacacacacgcatgcacgcacacacacacac 232
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 369 atatatatatatatatatatatatacacatacacacacgcatgcacgcacacacacacac 428
Query: 233 acacacacacacacacacacacacacacacacacacac----ggtcttctcatctatcct 288
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 429 acacacacacacacacacacacacacacacacacacacacacggtcttctcatctatcct 488
Query: 289 gcaagcccaggtgaagaacagaaaacaggtgctctagcttgttgagagtaggcatagtat 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 gcaagcccaggtgaagaacagaaaacaggtgctctagcttgttgagagtaggcatagtat 548
Query: 349 agctaagagagaatataaatagtaagcaaccacttgaggtacctgatgttattcaagagg 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 agctaagagagaatataaatagtaagcaaccacttgaggtacctgatgttattcaagagg 608
Query: 409 tagccagacagagggtttttttgttttgttttgttttttgtttttgtttatttgtttgtt 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 tagccagacagagggtttttttgttttgttttgttttttgtttttgtttatttgtttgtt 668
Query: 469 tgtttgttttctgtgagcaatggttaatg 497
|||||||||||||||||||||||||||||
Sbjct: 669 tgtttgttttctgtgagcaatggttaatg 697
Score = 78.1 bits (40), Expect = 1e-18
Identities = 43/44 (97%)
Strand = Plus / Minus
Query: 162 tatatatatatatatatatatatatatatatatatacacataca 205
|||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 387 tatatatatatatatatatatatatatatatatatatacataca 344
Score = 74.2 bits (38), Expect = 2e-17
Identities = 44/46 (95%)
Strand = Plus / Minus
Query: 152 tgtatgtatgtatatatatatatatatatatatatatatatatata 197
||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct: 401 tgtatgtgtatatatatatatatatatatatatatatatatatata 356
Score = 70.3 bits (36), Expect = 3e-16
Identities = 42/44 (95%)
Strand = Plus / Minus
Query: 162 tatatatatatatatatatatatatatatatatatacacataca 205
|||||||||||||||||||||||||||||||||| | |||||||
Sbjct: 383 tatatatatatatatatatatatatatatatatacatacataca 340
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 150
Number of extensions: 48
Number of successful extensions: 48
Number of sequences better than 10.0: 1
Number of HSP's gapped: 24
Number of HSP's successfully gapped: 6
Length of query: 497
Length of database: 897
Length adjustment: 10
Effective length of query: 487
Effective length of database: 887
Effective search space: 431969
Effective search space used: 431969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
