BAC Information

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BAC

Clone NameMSMg01-154I04
Chromosome4 (Build37)
Map Location 11,190,224 - 11,190,539
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666840, 1700123O12Rik, LOC383991, LOC100039656, LOC545589, 2610301B20Rik, LOC383992, LOC100039746, Plekhf2, 2310030N02Rik, LOC546828, LOC666897, Trp53inp1, Ccne2, Ints8
Downstream geneDpy19l4, Rbm35a, LOC634834, 1110037F02Rik, LOC100039847, E130016E03Rik, LOC100039862, Gem, Cdh17, Ppm2c, Tmem67, C430048L16Rik, LOC230010, LOC623671, LOC100039958, Rbm12b, 6720467C03Rik, LOC545592
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-154I04.T7 (MSMg01no154_i04.b1)MSMg01-154I04.TJ (MSMg01no154_i04.g1)
ACCAG355783AG355784
length771770
length of high quality
(start - end)
320 (107 - 426)354 (131 - 484)
definitionCHROMAT_FILE: MSMg01no154_i04.b1 PHD_FILE: MSMg01no154_i04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:19:09 2005CHROMAT_FILE: MSMg01no154_i04.g1 PHD_FILE: MSMg01no154_i04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:19:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTTTTTTTTTTNTTTTTNTTTTNCCCCCCCCNNCCCCCCCCCTCCCCCT
TCTTNTTTTCCATCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCGCGGAATTCCTCAAAGAAACATGAACATATTTGCTCTTAATAT
AACAAACCCATTGAAATAAGTGCCTTAACTTCTTTATTTCTAAATCCATC
TTATACTTTATGTCATATTACCTGTTTTCTTTTCCATAAGAAACTGCTGT
TAACTTTTGCCACATGGGTAAAGTTGAGTGAGGTGAGGCTTAGGCCCCTC
CCTCCCTCCAACCCTCCCTCACGTGTGTATGCATGTGTATGCGTGTGTAT
GCGTGTGTATGCGTGTCCTAGTGCCCTTCTGGCAAGAGCTTCTGGTCTTC
ATCCCCAGCACAACAAAACATTAAGCCATCCCACACCATTTTCATGATTA
GCTTCAATTCACTAAAAAGCAAATCTTTGCCAAGAATTTCCAGTCTTCTG
AATTAATCAATTAATTTTAGGCCCTTGCATGCCAAATAATCCAACATGTG
AAACCTACTTGAAAATGGATAGAATAATGGACCCCTGGACGTAACACGGA
CCCCGTGAACCCTACTTGACCAGTGATGCACCACGCCACTCCGTGATTTA
ACAACCTTTTTAAAAAATCCCTTTGGCTTTTGTCACCTTTGTGCCCTGCA
TTTTACTCGCCACTTAATTTTTTTATTTCCTTTTTTCCCATCTGACCCAT
ATAATTGTATTTATTTTTATA
TTTTTTTNNTNNNTTNTTTTTNNNCTNNNNCCCCCCCCCNNNCTCCACTT
CCTTCCNACGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCACCTTCAGGGCCTCTGTGG
GCACCTGCACTCACATGCACAATTAAAAAGGATAAAAATAATAGGCTGGA
GAGTTGGCTCAGCAATAAAGAGCATTTGTTGCTCTTGGAGAGGACAGGGT
TCAACTCCCAGCGCCCATATGGTGGCTCACACGCATCTGTAACTCCAGGT
ATGGGTGGTCTGGTGACCTCTTCTGACCTCTGCAGGTATCAGGCACAAAT
GTAGCACAGACACACATACAGTTGAGTTGACATTCACATACAGGAAATAA
ATCTCCAAAAATTAATAATAAAATCAAAACTAGATTTTATAAAATTCAAG
CAAACAGGAAGTGCTGCTTTTGAAACGAGGTCTGGCAGTGTAAATCTAGA
TAACTTTTGCTAGTGCTGAGACCAAGTCCTATGTTGCTGGAAATAGTTTA
AGGGTGGCATACGTAATTTGTCTAAATTAAAAACTACCAAAAGAAAAATA
ATAAAAATACATAATAAAGTGAGATACCTTCTCCCCATATGGTATTTTGC
TCACCATGGATGAATTTCCCATGTCCTAACCCCCCAGAACAAACTTCTCA
ATAATCATCCCTTTTTCTTAACAATGCTCAACCCCAAGCCTATATCCCCA
CTGCAGCGGCATATTCTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no154_i04.b1 MSMg01no154_i04.b1 CHROMAT_FILE:
MSMg01no154_i04.b1 PHD_FILE: MSMg01no154_i04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:19:09 2005
         (320 letters)



>mm_chr4_11190074_11190786
          Length = 713

 Score =  509 bits (263), Expect = e-148
 Identities = 304/325 (93%), Gaps = 17/325 (5%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcctcaaagaaaca-tgaacatatttgctcttaatataacaaacccattgaaata 62
           ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 ggaattcctcaaagaaagattgaacatatttgctcttaatataacaaacccattgaaata 407

                                                                       
Query: 63  agtgccttaacttctttatttctaaatccatcttatactttatgtcatattacctgtttt 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 agtgccttaacttctttatttctaaatccatcttatactttatgtcatattacctgtttt 347

                                                                       
Query: 123 cttttccataagaaactgctgttaacttttgccacatgggtaaagttgagtgaggtgagg 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 cttttccataagaaactgctgttaacttttgccacatgggtaaagttgagtgaggtgagg 287

                                                                       
Query: 183 cttaggcccctccctccctccaaccctccctcacgtgtgtatgcatgtgtatgcgtgtgt 242
           |||||||||||||||||||||    |||||  |  ||||||||| |||||||||||||||
Sbjct: 286 cttaggcccctccctccctcc----ctccc--a--tgtgtatgcgtgtgtatgcgtgtgt 235

                                                                       
Query: 243 atgcgtgtgtatgcgtgtcctagtgcccttc-------tggcaagagcttctggtcttca 295
           |||||||||||||||||||||||||||||||       |  ||||||||||||| |||||
Sbjct: 234 atgcgtgtgtatgcgtgtcctagtgcccttccctactata-caagagcttctgggcttca 176

                                    
Query: 296 tccccagcacaacaaaacattaagc 320
           |||||||||||||||||||||||||
Sbjct: 175 tccccagcacaacaaaacattaagc 151


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 713
Length adjustment: 9
Effective length of query: 311
Effective length of database: 704
Effective search space:   218944
Effective search space used:   218944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)