Query= MSMg01no155_c06.b1 MSMg01no155_c06.b1 CHROMAT_FILE:
MSMg01no155_c06.b1 PHD_FILE: MSMg01no155_c06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:19:59 2005
(434 letters)
>mm_chr4_17699260_17700093
Length = 834
Score = 594 bits (307), Expect = e-174
Identities = 313/315 (99%)
Strand = Plus / Minus
Query: 1 ttagtcagtaaatttcttgtctaacaagaataagaatccaagttaaatatccacaaatca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 515 ttagtcagtaaatttcttgtctaacaagaataagaatccaagttaaatatccagaaatca 456
Query: 61 cataaaaatgctaggtgtggtatctgcacccataactattttcaacatgaaattatggat 120
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cataaaaatgctaggtgtgatatctgcacccataactattttcaacatgaaattatggat 396
Query: 121 caatacaaatgtactgaagagtagaaagacagatggcactaaatgccaccagagagataa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 caatacaaatgtactgaagagtagaaagacagatggcactaaatgccaccagagagataa 336
Query: 181 aatcatatgatagattaagaagataattgaaaagaggtatggttaacagacagaaatatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 aatcatatgatagattaagaagataattgaaaagaggtatggttaacagacagaaatatg 276
Query: 241 agtgtttacaaatataaggaaaataagacatataatataaattggagaaatgaatctgga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 agtgtttacaaatataaggaaaataagacatataatataaattggagaaatgaatctgga 216
Query: 301 tataattgggtcaat 315
|||||||||||||||
Sbjct: 215 tataattgggtcaat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 434
Length of database: 834
Length adjustment: 9
Effective length of query: 425
Effective length of database: 825
Effective search space: 350625
Effective search space used: 350625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no155_c06.g1 MSMg01no155_c06.g1 CHROMAT_FILE:
MSMg01no155_c06.g1 PHD_FILE: MSMg01no155_c06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:19:59 2005
(265 letters)
>mm_chr4_17545844_17546508
Length = 665
Score = 470 bits (243), Expect = e-137
Identities = 260/267 (97%), Gaps = 5/267 (1%)
Strand = Plus / Plus
Query: 1 tttttttttttatctttttttttcttttattggatattttc--ttttttttctttttttc 58
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 202 tttttttttttatctttttttttcttttattggatattttcttttttttttcttttttt- 260
Query: 59 ccaatttttattaggtatttagctcatttacatttccaatgctataccaaaagtccccca 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccaatttttattaggtatttagctcatttacatttccaatgctataccaaaagtccccca 320
Query: 119 tacccacccacccctactcccctacccacccactccccctttgaattctaagtcaaataa 178
|||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tacccacc--ccccaactcccctacccacccactccccctttgaattctaagtcaaataa 378
Query: 179 acccttgacacctgcagtttctgcttttggtcagaaggtaatttttttaaacaactattt 238
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 acccttgacatctgcagtttctgcttttggtcagaaggtaatttttttaaacaactattt 438
Query: 239 acagtccttatttaatgtcttcattat 265
|||||||||||||||||||||||||||
Sbjct: 439 acagtccttatttaatgtcttcattat 465
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 265
Length of database: 665
Length adjustment: 9
Effective length of query: 256
Effective length of database: 656
Effective search space: 167936
Effective search space used: 167936
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
