Query= MSMg01no155_d08.b1 MSMg01no155_d08.b1 CHROMAT_FILE:
MSMg01no155_d08.b1 PHD_FILE: MSMg01no155_d08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:20:04 2005
(459 letters)
>mm_chr4_107255870_107256728
Length = 859
Score = 826 bits (427), Expect = 0.0
Identities = 451/459 (98%)
Strand = Plus / Minus
Query: 1 agagacaaaaaggtgatgtggtagcttgtgtagggtagaaaacccaactggtgcaaccaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 agagacaaaaaggtgatgtggtagcttgtgtagggtagaaaacccaactggtgcaaccaa 600
Query: 61 agccttagaaacagccccataaatacagagaagcctggtatgtatgtgccggggtgaaac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 agccttagaaacagccccataaatacagagaagcctggtatgtatgtgccggggtgaaac 540
Query: 121 tgactgtcaccaggatgtgggggatggataaatcattgagcaaaccctcaaatgactgga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 tgactgtcaccaggatgtgggggatggataaatcattgagcaaaccctcaaatgactgga 480
Query: 181 tgactaggtggaaactggatttctacctatctgaaactcaaaaagtgggagcaaaattaa 240
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 479 tgaccaggtggaaactggatttctacctatctgaaactcaaaaagtgggagcaaaattta 420
Query: 241 aaaatgaatccctaacaacccgagacaatttgttgacggattcgggtaaagagttcttgc 300
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct: 419 aaaatgaatccctaacaacccgagacaatttgttgacagattcaggtaaagagttcttgc 360
Query: 301 aacagtcacaaagcacaccacaagaggaaggatgataattctttaaagcgaagagctcct 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 359 aacagtcacaaagcacaccacaagaggaaggatgataattctttaaagcgaagagctcat 300
Query: 361 ctggaggacaaatgcaatcagggaagtcgaactgtacgtcacgaaccggcagaagacacc 420
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 299 ctggaggacaaatgcaatcagggaagtcgaactgtacgtcacgaactggcagaagacacc 240
Query: 421 cagaatctctaggaccagtaagtccactgggaagcaggg 459
||||||| |||||||||||||| ||||||||||||||||
Sbjct: 239 cagaatccctaggaccagtaagaccactgggaagcaggg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 459
Length of database: 859
Length adjustment: 10
Effective length of query: 449
Effective length of database: 849
Effective search space: 381201
Effective search space used: 381201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no155_d08.g1 MSMg01no155_d08.g1 CHROMAT_FILE:
MSMg01no155_d08.g1 PHD_FILE: MSMg01no155_d08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:20:04 2005
(425 letters)
>mm_chr4_107198893_107199716
Length = 824
Score = 791 bits (409), Expect = 0.0
Identities = 421/425 (99%), Gaps = 1/425 (0%)
Strand = Plus / Plus
Query: 1 ctcacagtggagggccatgagaggggaagatgccaggatacttgagcaggctcccagaag 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 201 ctcacagtggagggccatgagaggggaagatgccaggatact-gagcaggctcccagaag 259
Query: 61 gccccgcaggtagctcctgagtggctgagtaaggaggcggggtgtggggagctggagacg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 gccccgcaggtagctcctgagtggctgagtaaggaggcggggtgtggggagctggagacg 319
Query: 121 ggtgggcatgggcgagcagtcagagcccctgtgtgctggtgtcggaactcctgtgtgctg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ggtgggcatgggcgagcagtcagagcccctgtgtgctggtgtcggaactcctgtgtgctg 379
Query: 181 cggtcaggaaagcctggccgtggagtcagcctgtgttggttggttttctgttgctatgac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 cggtcaggaaagcctggccgtggagtcagcctgtgttggttggttttctgttgctatgac 439
Query: 241 agcatacccaaggcagagtaacctaaaaagaaaaaagtgtattttggcccaggctcctga 300
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 440 agcatacccaaggcagagtaacctaaaaagaaaaaagtgtattttggctcaggctcctga 499
Query: 301 tggacagaaagttcaagaccaggcgtccacacctgggaagactcttgggctacttcagct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tggacagaaagttcaagaccaggcgtccacacctgggaagactcttgggctacttcagct 559
Query: 361 cagggcaggaagtaggtgagtggacatgtgcagaagtggggggttgggggctggcgtgca 420
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct: 560 cagggcaggaagtaggtgagtggacatgtgcagaagtggggggtcgggggctggcgtgga 619
Query: 421 gctca 425
|||||
Sbjct: 620 gctca 624
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 425
Length of database: 824
Length adjustment: 9
Effective length of query: 416
Effective length of database: 815
Effective search space: 339040
Effective search space used: 339040
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
