BAC Information

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BAC

Clone NameMSMg01-155L17
Chromosome4 (Build37)
Map Location 77,740,254 - 77,740,716
singlet/doubletsinglet
Overlap geneLOC100039974
Upstream genenone
Downstream geneLOC100039996, LOC100040026
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-155L17.T7 (MSMg01no155_l17.b1)MSMg01-155L17.TJ (MSMg01no155_l17.g1)
ACCAG356662AG356663
length860746
length of high quality
(start - end)
142 (145 - 286)463 (77 - 539)
definitionCHROMAT_FILE: MSMg01no155_l17.b1 PHD_FILE: MSMg01no155_l17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:42 2005CHROMAT_FILE: MSMg01no155_l17.g1 PHD_FILE: MSMg01no155_l17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTTCATGAGTTCATGCAGCTCTGTGCAGATCAGCAGGGCAGTTGA
AGTCCGAGAATAAGAAGGAGACAGAAGATTAGAGCACATTGCCAGAGTTA
GAGGCCAAGCAAAGCAGTTTCAGTCAGAAGCTGAGAAAAGTTAGATTAAA
TCAGTCACCTTGGTTAAGAGTCGGCCATCACTGCAAAGAGAGGCCCATTG
GACTTGCAAACTTTATATGCCCCAGTACAGGGGAACGCCAGGCCCCCACC
GGGGCAGCGCGTGCCCCTCTTTTTTCCCCTACCCCCCCCCCCCTTCCCCC
CCTCTCGTCTTTTTTTTTTCCTCCTCCCCCCTCGCTCCCCCTCTCTCCTT
CCTTTCTTTGTTCTATCCTCCCCCCCCCCCCCCCCTATCACTCTCCCCTT
CCCCCTCCTCCCCCCCCTTCTCCGTCCCCCCCCCCTTCCTCTCTTCTCTC
TTTCTCCCCTCCTCTTCCCCCTTTCCCTCCCTCCCCCCCCTCCTTTCTCC
CCCAACTCCCCTATCCTTCTCCCTCCCCCTCTTTTCTTTCCTCCCTCCTC
CCTCCCATCCCCTTTTTCTTATCCCCCCCCTCCCTCCTCCCCCCTACGTT
TCTTTTCACCCTCCTCTCCTCTCTCCCTCTCCCCCCCCCCCCCCGTCATT
TCCCCTTTCCCCTCTCCTTCCCCCCCCCCCCTCCCCCCCCCATCTCTCCC
TTCCCTTTCCCCCCTCTTCCCCCATCTCCCCTCCCCCCCCCCCCCCCCCC
CCCTCTATCTCTCCCCGCGTCCTCCCTCCACCCATCTCCCGCCCTCCTCC
CCTCATCTTG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTACAAGATAAAAATCCTGAACC
TCTTCTATGTTTTCTTGTATTTGTTTTCTGGCCTCAGGAATTCTATTTAC
GCTTCTGATAAGATTTGGTGTTTTTTGTTGTGCTGGAAATAAAATTAAAG
TTCAGCATGGTCTCTTTGGATTACGGTACCGATTTCCCTAGTTGTAGTGG
CTGGAGCAGCATCCCATCCCAACAGTTTTTGGTTCCAAAACCATTGTCTA
GGTTTAGTTCTGTACCAACTCTTCTGTTCTCCACATGTTGCTGTAATGGT
AGCCATTTAAATAAACATTTTGATACCAAGGAGCATAATGTTGTTGACTC
TGTTATTTAATTATGCTGTTTTGGCTATGCAGAATCATTACTGGTTCTAC
AAAGATTTTTGAATTGTTCTTTTTCTTTCCATATAAAATTCCAGAGAGAT
TTTGACATGAATTAAATGATATTTGTAAATAACTTTGAATAGATGAACAT
TACCATAAGATTAGTCTTCATAAGTGATATAAAATTGAATATGCTTTTAA
ATGACTTCATGAATATTCTATATTTTTCTCTCATGTCCTTTATTCATTTT
ATTTATTTACCCTCAGATTTTATTCTCCCTCCTGGTCTACCTTTCCACTG
TTCCACATCCCAATCGTCCTCCCTACCCTCCCCATCCCCGTTTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no155_l17.g1 MSMg01no155_l17.g1 CHROMAT_FILE:
MSMg01no155_l17.g1 PHD_FILE: MSMg01no155_l17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:20:42 2005
         (463 letters)



>mm_chr4_77740054_77740916
          Length = 863

 Score =  888 bits (459), Expect = 0.0
 Identities = 462/463 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttacaagataaaaatcctgaacctcttctatgttttcttgtatttgttttctggcctca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttacaagataaaaatcctgaacctcttctatgttttcttgtatttgttttctggcctca 260

                                                                       
Query: 61  ggaattctatttacgcttctgataagatttggtgttttttgttgtgctggaaataaaatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggaattctatttacgcttctgataagatttggtgttttttgttgtgctggaaataaaatt 320

                                                                       
Query: 121 aaagttcagcatggtctctttggattacggtaccgatttccctagttgtagtggctggag 180
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaagttcagcatagtctctttggattacggtaccgatttccctagttgtagtggctggag 380

                                                                       
Query: 181 cagcatcccatcccaacagtttttggttccaaaaccattgtctaggtttagttctgtacc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagcatcccatcccaacagtttttggttccaaaaccattgtctaggtttagttctgtacc 440

                                                                       
Query: 241 aactcttctgttctccacatgttgctgtaatggtagccatttaaataaacattttgatac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aactcttctgttctccacatgttgctgtaatggtagccatttaaataaacattttgatac 500

                                                                       
Query: 301 caaggagcataatgttgttgactctgttatttaattatgctgttttggctatgcagaatc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caaggagcataatgttgttgactctgttatttaattatgctgttttggctatgcagaatc 560

                                                                       
Query: 361 attactggttctacaaagatttttgaattgttctttttctttccatataaaattccagag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 attactggttctacaaagatttttgaattgttctttttctttccatataaaattccagag 620

                                                      
Query: 421 agattttgacatgaattaaatgatatttgtaaataactttgaa 463
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agattttgacatgaattaaatgatatttgtaaataactttgaa 663


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 463
Length of database: 863
Length adjustment: 10
Effective length of query: 453
Effective length of database: 853
Effective search space:   386409
Effective search space used:   386409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)