BAC Information

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BAC

Clone NameMSMg01-155L19
Chromosome4 (Build37)
Map Location 81,026,413 - 81,026,785
singlet/doubletsinglet
Overlap geneMpdz
Upstream geneTyrp1, D4Bwg0951e
Downstream geneLOC100040131, LOC100040144, EG668895, LOC100040164, EG545641, Nfib
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-155L19.T7 (MSMg01no155_l19.b1)MSMg01-155L19.TJ (MSMg01no155_l19.g1)
ACCAG356666AG356667
length787762
length of high quality
(start - end)
224 (43 - 266)373 (78 - 450)
definitionCHROMAT_FILE: MSMg01no155_l19.b1 PHD_FILE: MSMg01no155_l19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:42 2005CHROMAT_FILE: MSMg01no155_l19.g1 PHD_FILE: MSMg01no155_l19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGCTCTGTGCCCCTCTTG
TGTAGCCATCTACTTTCTTCAGTAGGTTGCAGTTTTCAGGATTTCATCTT
TTCCAATGTCAACATTTGGAGTTTTACTCTTTGGGAATTGTGATCAACAG
GATTTGGATCTTGGGAGATTTTATACTTTAGGGATTTGGCTCTTTTAGGA
TTTCAACATTTTAGATAATGACCAGATTATGTATCTTTCAGGGTTCTGAC
TGGCAGTGGGTGATCTGGCAGAAGTATGCTTGTTAGTATCCCACCTTTGA
TCTTCTTCCTTGGTCTCTGCATTGCTGCTAATATATGTTGGCTGGCCTAC
GCACTTTCCTCCCCTCTTCCTCCCCTTTCTCTTACCCCCCTCCCCCTCCC
ATTACCTTCTCTTTTTCCCCTTCTCTGTCCCTCCTCTCCATACCCCGTCC
CCCCTCTCCCCCCCCCTCCCCAACTTCCCCCCTCCCCCTCCTTTCTCTTT
ATCTCCGTCTCCTATCCCCCCCCTTCTTTTCTCTTCCCTACCCCCTTCTT
TTTCTTTTTTCCCCCCTCCTTCCCCTCCCTCCGCCCTCCCTCATTTCCCT
CTTTATCCCTTTCTCCACTCCTCCCCACCTCCCTTTTTTCCTCTTCTCAC
TCTTTTCTCCCCCCCATCCCTCCCCTCCATCCCCTCTCCCTCCCTTCTTC
TTCCTTTTGTTATTCTCACGTTTTCCTCCTTCTATACGATTGCTAATCCT
ATCTCCTGCCTTCATAACTCCCTCCCCCCCTTTTTAN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTCACTTAAAGATTCTAGGAGAT
CATTTCACACTTTCTGTAAGCAACCATTTTATAAGGATATTTTGAAGCAC
ATACGAAATTTTAGTGTTGTACTGTTCAACTGCCTATAATATTGAAGTCT
ATCTTTGTCTTACTTAGAAGCCTCTTTGTAAACTGGGCCATCATTCTAAT
CATGATCTTTCATTAACTGTTCTCTAAATAGTTTCTTATGTGGCAGATGG
GGATTGGGAGCCATGATGGTGTTAATGGATGAGGCTTACGAACATCCCTG
TGTCATTTCTTTAATATGTGTAAGCTATGGACTATTACCCGATCTATGAT
GAGCGACTGTCATTGCAAATACTTGCTTAAAACAGTACCGATGTTTTGCC
ATGGCACATTGCCCATGATTCCTCAGTGTTCTGCCCCATATTTGCCCTAC
ATTTGTCATGAAAAGAAGTTGGAAACTTTCACAATTCTTGACACGTTACA
CTTATATCTCGACAACTACCAGATTATTAGTTATATCCGTCGACCTACCG
TTTCAATTACTGCCCTGCTATTAACCACAAACCCCAACCTCCTCCCCCCC
CTGTCTCCACTTCCTTCTCCCAATCCTACCTTCTACCCGAATTTCTTACA
CCAAATTTTTCCCCACAACATCTCACACTCCCGTGTATCTCCCATTTCTC
CCACCTTATGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no155_l19.g1 MSMg01no155_l19.g1 CHROMAT_FILE:
MSMg01no155_l19.g1 PHD_FILE: MSMg01no155_l19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:20:42 2005
         (373 letters)



>mm_chr4_81026213_81026985
          Length = 773

 Score =  659 bits (341), Expect = 0.0
 Identities = 365/373 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctcacttaaagattctaggagatcatttcacactttctgtaagcaaccattttataagga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 ctcacttaaagattctaggagatcatttcacactttctgtaagcaaccattttataagga 514

                                                                       
Query: 61  tattttgaagcacatacgaaattttagtgttgtactgttcaactgcctataatattgaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 tattttgaagcacatacgaaattttagtgttgtactgttcaactgcctataatattgaag 454

                                                                       
Query: 121 tctatctttgtcttacttagaagcctctttgtaaactgggccatcattctaatcatgatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 tctatctttgtcttacttagaagcctctttgtaaactgggccatcattctaatcatgatc 394

                                                                       
Query: 181 tttcattaactgttctctaaatagtttcttatgtggcagatggggattgggagccatgat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 tttcattaactgttctctaaatagtttcttatgtggcagatggggattgggagccatgat 334

                                                                       
Query: 241 ggtgttaatggatgaggcttacgaacatccctgtgtcatttctttaatatgtgtaagcta 300
           || |  ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 ggcgggaatggatgaggcttacgaacatccctgtgtcatttctttaatatgtgtaagcta 274

                                                                       
Query: 301 tggactattacccgatctatgatgagcgactgtcattgcaaatacttgcttaaaacagta 360
           |||||||||| | ||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct: 273 tggactattaacagatctatgatgagtgactgtcattgtaaatacttgcttaaaacagta 214

                        
Query: 361 ccgatgttttgcc 373
            ||||||||||||
Sbjct: 213 gcgatgttttgcc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 373
Length of database: 773
Length adjustment: 9
Effective length of query: 364
Effective length of database: 764
Effective search space:   278096
Effective search space used:   278096
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)