BAC Information

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BAC

Clone NameMSMg01-156E22
Chromosome4 (Build37)
Map Location 63,986,626 - 63,986,935
singlet/doubletsinglet
Overlap genenone
Upstream geneCol27a1, Orm1, Orm-ps, Orm3, Orm2, Akna, Whrn, Atp6v1g1, 6330416G13Rik, LOC670833, 1700018C11Rik, LOC667451, Tnfsf15, Tnfsf8, Rpl17-ps, Tnc
Downstream genePappa
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-156E22.T7 (MSMg01no156_e22.b1)MSMg01-156E22.TJ (MSMg01no156_e22.g1)
ACCAG357081AG357082
length745748
length of high quality
(start - end)
314 (46 - 359)---
definitionCHROMAT_FILE: MSMg01no156_e22.b1 PHD_FILE: MSMg01no156_e22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:21:24 2005CHROMAT_FILE: MSMg01no156_e22.g1 PHD_FILE: MSMg01no156_e22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:21:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCAAAGCTAAATGCCTAAATGCAAGGGTTGACCCAATTTTGGATT
TTCATATGTATATGTAGTCCTCCAAAAGATGGCTGATAGGAGGGGAAGTA
TGCCACGGGCATCTGCATGTCTCCGCCAAAGAATTCATATTTTCCTCAAA
GAAACTGAACTGTCACCTTTAATATAAATGGCTATCACTGAATTTTATAT
GCCATAGTTAATAATAATGGCATTTCAGCTTCTGAGTCTGGTAGAAGCAT
GTTTTCTGTGGTTCCATGGCTTGAGGGCAGTGTTTGGAATAGAGTTAGCT
GTCACCTCCTATTCTTCTAGCTCCGACCTACTCACAGCTGACACATTCAT
CAACCACATAGATGCCTTGCTTAAAAAGATAGGCAGGTCAAAGTTTTACC
GGCAATAGTTGCAATAACTAGGGATAGAGTTACAAGAAATTTGGAAAATC
TTGCTCTGAGAGTCTGTCATCACAATGATTAGAGTCTCCACAAGGCACCT
TATTTAACAGTGGGTAAGCTATAATCTTATATACTTCTATTGAAACATGT
ATCTCACCCTACTGTATAACGCTTTCCATCTTAGTCCTTCAGTAACAGTA
ACTTTTACCCACTCAATATGATCTTCAACCCTTATCCTCTGTTTTTAAGG
AACATCGATTTTTCGTACAGTTGGGGGTATTCAATTAGTGGCTAT
CGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAAACTCATGTAACAATCCAAACG
GGGGCTGGGTTAACAAGGAAAAAAACCTGAGGGAACTATACAAAAAGGGA
ACCAAGGGGGAACGGAATATGAAACTCAATTATTTGGGGGGAAGCTGAAA
AAATTGGGAATAGAAAGGCAAAGCCAAACTCTTTGGAAGGAATACCCAAA
AACACAGGGGCTGCCACCTACTTAAAAGGCAATAAAAGGAAAAGTTTCAA
CAAAAACACCTACTTCCCCCTTACAAAGCTGCTTTGAAGGCCGGGACATA
TCCCATACTTTTTTATTGCCCGCCCCCCCCCAAAGGACTCCTACGTAGAA
GGTAAGCACCCCCCTTGAACCCGGAAAGGATAAAAGGGAGGGAAGAACCC
AAAAGGCCTGGAAAAAATTTCACCATTTCATTAAAAGGGACCTACCTGTG
AAAGGGCCAATTTGAAACCAGCCCCAATTCTCAAACTTCTTAAAGGCTTT
TCCTCCCAAAAGGAAAGAAAAGAAAGCATGGTTCACTCCAACCACCACTT
ACACACACACACACACTCACCCACATTCTCACTCACAGGTTCAGGAATTT
TGTGAGCATCATGGCTGGGAAAAGCTAATCCATCTAAAAAAAGGAAAGAA
GGCAGGAACCCAGTGGAAAGGGCTCCTGAAGGCAAAAACCACTGAATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no156_e22.b1 MSMg01no156_e22.b1 CHROMAT_FILE:
MSMg01no156_e22.b1 PHD_FILE: MSMg01no156_e22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:21:24 2005
         (314 letters)



>mm_chr4_63986422_63987135
          Length = 714

 Score =  576 bits (298), Expect = e-169
 Identities = 307/310 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcaaagctaaatgcctaaatgcaagggttgacccaattttggattttcatatgt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcaaagctaaatgcctaaatgcaagggttgacccaattttggattttcatatgt 264

                                                                       
Query: 65  atatgtagtcctccaaaagatggctgataggaggggaagtatgccacgggcatctgcatg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 265 atatgtagtcctccaaaagatggctgataggaggggaagtatgccacgggcatctgcata 324

                                                                       
Query: 125 tctccgccaaagaattcatattttcctcaaagaaactgaactgtcacctttaatataaat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tctccgccaaagaattcatattttcctcaaagaaactgaactgtcacctttaatataaat 384

                                                                       
Query: 185 ggctatcactgaattttatatgccatagttaataataatggcatttcagcttctgagtct 244
           ||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 385 ggctatcactgaaatttatatgccatagttaataataatggcatttcaacttctgagtct 444

                                                                       
Query: 245 ggtagaagcatgttttctgtggttccatggcttgagggcagtgtttggaatagagttagc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ggtagaagcatgttttctgtggttccatggcttgagggcagtgtttggaatagagttagc 504

                     
Query: 305 tgtcacctcc 314
           ||||||||||
Sbjct: 505 tgtcacctcc 514


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space:   215025
Effective search space used:   215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)