BAC Information

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BAC

Clone NameMSMg01-156J02
Chromosome4 (Build37)
Map Location 35,121,428 - 35,121,528
singlet/doubletsinglet
Overlap genenone
Upstream geneSpaca1, LOC100039220, LOC665361, LOC665367, 2700059D21Rik, Orc3l, Rars2, Slc35a1, 1700003M02Rik, Gm136, 1810030N24Rik, Zfp292, Cga, Mobkl2b, Ifnk
Downstream gene3110043O21Rik, LOC620559, LOC621227, Lingo2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-156J02.T7 (MSMg01no156_j02.b1)MSMg01-156J02.TJ (MSMg01no156_j02.g1)
ACCAG357274AG357275
length759809
length of high quality
(start - end)
324 (45 - 368)160 (77 - 236)
definitionCHROMAT_FILE: MSMg01no156_j02.b1 PHD_FILE: MSMg01no156_j02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:21:44 2005CHROMAT_FILE: MSMg01no156_j02.g1 PHD_FILE: MSMg01no156_j02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:21:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTAAGACAGTCAGCAGCACGGAACCTGCGAGCCAAGAGGAAGCTAA
ACTTGCACCCTCACTAGGGGCTAAAAGGGCCTGAAATGAGGCACCAAATT
ACCTTACAAATACCTTTAGCAAGAGAATTTTAAATAGAAACTTAGATGAT
TTGTTTTTAATTTTAAATTGAGTGCCCTGCCTGAGGAAACAGAAGTGTCA
GACCCACCTTGTGATAGCCTTATAGGCAGCTCAAGTTGTGAGCCTCAGAC
GTGGGGCTGGCTGACCTCCAGATCTTTGTAAGAGCAGAACACATTCTTAC
TTGAGTCCTAATAACATAGCTTTTACATATGTGTATTTGTGTGTAGGGAT
GGGGTGGACATCCCGCCCCCCCCACACAAGAATCCCTTTTTCTTGCCCCT
TTGCGCCCCCCCTCTTTTTGTCTCTCCCCGCCAGCCTCGCCTTCCGCTTT
TCTCCTCTTCACGCTCTTATCCTTGTTTGTCCCTTATTCTTTATCATCGC
GTTCATCCTCCTTTTCCGACCCTTTTTCCTTACTCTTTCTCCCCTTGTTT
CCCCTTATCCCCTCTTTCCTTCTCCTTTTCCCCTTTCCTCTGCCCTTTTT
CTTGCTCCCCCTTCTTCTCTGCCCCCTTTTTTACTCTTTCCTTAACCCCC
CCGGCTACCCCACTTTTTCCTCCTCCGTCATCTCCGCCTCTACTTTTCTT
CTATCTTTT
TCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACATGGAGGCTTGCCAGCTATCAG
TACCTCCAGTTCCAGGGGACTTGGTGCCCTCTTTTGGCCTCCACAGGTAC
TGCGTGCACATGTTGCACAGATATACAAGCAGGCACTCAGACAAAAAATA
AAAATAAATCTTTTTTTTTTTAAAGGACTTAACGCGAGAAACTTAAACCA
GTAAAATGGAGNNNNNNTTCCCCTCTTTCACTCCATTCCTCCTCCTTCCT
TCTTCGGGCCTTGTCCGCTTTTCACCCCAACCTCTCCCTTTTTTCTCCCT
CCTTCTCTTTCCTTCCCCTTTTCCTCTTCCCCATCAACTCCCAAACCTTC
GTCCCCCTCTTTGCTTGATACCCCCTCTTCTTTTTTTCGTTTCCCCCCCC
CAACTTATCCCTTTTCTCCTTCCTTCCCCTTCCCCTATCTCCTTCCCTTC
TTCGACCCTAGTTCTTATATCTCTATAATCCCCCCATATTTTCCTTATTC
CCCTTACTACCGCTTCTTTCTTCTCCACTTCTACCTACCCGCATATTTGT
CCATCGATATTTTTCCCCATCCCTCCCCCGCTTCTTTCCCGAATTTGCAC
TATCTCCTTATCTATTATCCCTTCCTTCCCCCTATCCTTCCCCCGGCCCT
CCTTACCCTATTTTTCCCCTATTTTCTCCCTTCCCCTCCCGCTTTCGCTC
CTTTTTTCGCTATTCCGCGCCCTTCATTCTCCCCCCTCTTATTTACTCCC
CATTTGCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no156_j02.b1 MSMg01no156_j02.b1 CHROMAT_FILE:
MSMg01no156_j02.b1 PHD_FILE: MSMg01no156_j02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:21:44 2005
         (324 letters)



>mm_chr4_35121225_35121948
          Length = 724

 Score =  180 bits (93), Expect = 1e-49
 Identities = 99/101 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcctaagacagtcagcagcacggaacctgcgagccaagaggaagctaaacttgca 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 204 ggaattcctaagacagtcagcagcacggaacctgcgagccaagaggaagctaaacttgcg 263

                                                    
Query: 64  ccctcactaggggctaaaagggcctgaaatgaggcaccaaa 104
           |||||||| ||||||||||||||||||||||||||||||||
Sbjct: 264 ccctcactgggggctaaaagggcctgaaatgaggcaccaaa 304


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 724
Length adjustment: 9
Effective length of query: 315
Effective length of database: 715
Effective search space:   225225
Effective search space used:   225225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)