Query= MSMg01no156_n11.b1 MSMg01no156_n11.b1 CHROMAT_FILE:
MSMg01no156_n11.b1 PHD_FILE: MSMg01no156_n11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:22:04 2005
(624 letters)
>mm_chr4_43979805_43980828
Length = 1024
Score = 806 bits (417), Expect = 0.0
Identities = 572/643 (88%), Gaps = 54/643 (8%)
Strand = Plus / Plus
Query: 5 gaattcataatccaggtgggcacaggctcttccctctccacagccccacccggctgattc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 gaattcataatccaggtgggcacaggctcttccctctccacagccccacccggctgattc 272
Query: 65 tgtcctcctttcatgtgacc---------tcttccctaaactctcagtccatccctcaag 115
|||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 273 tgtcctcctttcatgtgaccacggtgtcctcttccctaaactctcagtccatccctcaag 332
Query: 116 gctgctgccattgagcctcttagttagtactatctcattctctctctctctctctctctc 175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 gctgctgccattgagcctcttagttagtactatctcattctctctctctctctctctctc 392
Query: 176 tctctctctctctctctctctctctctctgtctcttctctctctctctctctctctctgt 235
||||||||| ||||| |||||||||| || || || |||||||||||| || |||||||
Sbjct: 393 tctctctctgtctct-tctctctctc-ct--ct-ttgtctctctctctc-ctttctctgt 446
Query: 236 ctcttctctctct--ctctctgtctctgtctctg-tctc-ctc-tctttgtctcttctct 290
||| |||||||| ||||||| |||| ||||| |||| ||| || |||| ||||||
Sbjct: 447 ctc--ctctctctggctctctgactctatctctcctctctctcctccttgt---ttctct 501
Query: 291 ctctc---ctctttgtctctctctctctc-ctttctctgcctcctctctctggctctctg 346
||||| |||| | |||||||||||||| |||||||| ||| |||||| ||||||
Sbjct: 502 ctctctttctctctctctctctctctctctctttctct--ctc-tctctc---ctctct- 554
Query: 347 actctatctctcctctctct--ccccccccgatctctgtctctgtctc-tgtctctctct 403
||| |||||||||||||| | |||||| |||| |||| |||||||| |
Sbjct: 555 -ctccctctctcctctctctgtc---------tctctgactctttctcctgtctctcccc 604
Query: 404 ctc-tctc-tcctcgctctccctctctctctctcctgtctgtgtctccctgtctcccttt 461
| | |||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 c-catctcat--tcgctctccctctctctctctcctgtctgtgtctccctgtctcccttt 661
Query: 462 ctccatccacccatgccccttgtattcactggtccaatatggtaccacccaccctagcta 521
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 ctccatccacccatgcctcttgtattcactggtccaatatggtaccacccaccctagcta 721
Query: 522 agctccttccttctccctgagctcccaaccccagctctccccagactccattggtctagt 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 agctccttccttctccctgagctcccaaccccagctctccccagactccattggtctagt 781
Query: 582 ctgaggtatccagccaccttcagatattttcctctagcaatgt 624
|||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 782 ctgaggtatccagccaccttcagacattttcctctagcaatgt 824
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 138
Number of extensions: 18
Number of successful extensions: 18
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 624
Length of database: 1024
Length adjustment: 10
Effective length of query: 614
Effective length of database: 1014
Effective search space: 622596
Effective search space used: 622596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no156_n11.g1 MSMg01no156_n11.g1 CHROMAT_FILE:
MSMg01no156_n11.g1 PHD_FILE: MSMg01no156_n11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:22:04 2005
(293 letters)
>mm_chr4_44096630_44097322
Length = 693
Score = 551 bits (285), Expect = e-161
Identities = 291/293 (99%)
Strand = Plus / Minus
Query: 1 gagccgctctccctccctttcaaagaggcggggcttgagagttagtctggaccgcaggtg 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 gagccactctccctccctttcaaagaggcggggcttgagagttagtctggaccgcaggtg 434
Query: 61 cttgctaatgaccacttcgtggcagctaaaccagaggccagacggcagctcggggagtcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 cttgctaatgaccacttcgtggcagctaaaccagaggccagacggcagctcggggagtcc 374
Query: 121 gaccacacctcaggaaacagctgtgccacaggatggaaacacacgcgcatctccacaggg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 gaccacacctcaggaaacagctgtgccacaggatggaaacacacgcgcatctccacaggg 314
Query: 181 agcagagctacgcaggacctcatgtgagtaacccctaggtcccctagagcactgtgcctt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 agcagagctacgcaggacctcatgtgagtaacccctaggtcccctagagcactgtgcctt 254
Query: 241 tgctgtcagaaacaaaggtcatcaaaagcaggaagggagcttatttttaaatc 293
||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 253 tgctgtcagaaacaaaggtcatcaaaagcaggaagggagcttagttttaaatc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space: 194256
Effective search space used: 194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
