BAC Information

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BAC

Clone NameMSMg01-157E07
Chromosome4 (Build37)
Map Location 53,656,300 - 53,656,530
singlet/doubletsinglet
Overlap geneFsd1l
Upstream geneLOC100040908, LOC666761, Olfr275, Olfr274-ps1, Olfr273, LOC230185, Olfr272, Olfr271-ps1, Olfr270, 1700054F22Rik, Nipsnap3a, Abca1, 4930522O17Rik, AI427809, LOC100041197, Slc44a1
Downstream geneLOC666483, Fcmd, Tal2, LOC435784, Tmem38b, LOC670124, LOC100041280, LOC666901
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-157E07.T7 (MSMg01no157_e07.b1)MSMg01-157E07.TJ (MSMg01no157_e07.g1)
ACCAG357794AG357795
length717720
length of high quality
(start - end)
229 (420 - 648)285 (66 - 350)
definitionCHROMAT_FILE: MSMg01no157_e07.b1 PHD_FILE: MSMg01no157_e07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:35 2005CHROMAT_FILE: MSMg01no157_e07.g1 PHD_FILE: MSMg01no157_e07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXTATCAGAAGCGAGCGCGGAATTCACAAC
TTTCCAAACAACTCATGGGCATGTGGCCTCTGTGGTCAGGCGAACCTCTC
AGATTTTTAACCGAAAATAAATCTTTAAAAAATTGTCACAGTAGTATTGA
AAATCGATGTGAACTTCTTTCCAGAACAGCTGCTGTAGTACTTCCTGGAC
CAATACAGTTTGAAAAGGGGTCTCTGATTTTTGCCTTGATAATGGCAAGA
ATTTCAGATGAATTAAATGGAAATGGTAAAAATAAGATTAATTGTAATCT
AAAGGTGTCCATCCTGTAGTAATTAACAGTATCATACAAAATAGACACTA
TTTTGGCGGCCCGCTGCGTTTGATAACTCACATGAAGGCTGTCCCTGGAT
ACAGTCTTATTTGAACAGTTTCTATTTTTACTTTGTGATCTCCCCAAATT
CTGCTCCAATGAGAAGTATTGGTGATCAGTGTGTGTTTTCCCCACAGCGT
ACATTTATTTCCCCCTTGTTGTTGTGGTTTCTAAGAGTCTTTAGGCTCAG
AGTAATGCTGCCTCTGCACCATTTCTTATTTTTCTTTTTCTGAGAGTTGA
TAACTTTATAGGATTTTATATGTTCTAGTGCTAGTAATTACACAAATATT
AACTTAGAAATTAGTGAAACTCTGGTAAAGAAACTTAGTTTGACCATTTC
CACTTATAGCCACATAT
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXACGCCCAGTCACTGCCCATCTCAGGGCGTAGTAAT
GGGGTGATGGGCGAGCAACTAATCAGGTGCTGAAATGTCACACTGTGGGC
TATATAAGCAGCGCCATTTTCTGAGTTCGGGGTCTTCCTGAGAAGTAAGC
AATAAAAGCTTTGCCGTAGAAGGATCCAGTTGTCTGAGTGAATTCTTGCC
AGCAAGATACTAGCTCGGGCGAGATTAGGCCACACTGTGTTGTACAAGCA
GGATGGGTAGAATCATTAACAGCGTGTTCTACGTTCAGAATCACTGAATC
CTGTTTTTAAGGAACAGCGCCGGTGTATACAATACAAAATAAACTGCTAG
AATAAATTTAGGAAACATTTTCTAGTTTAGTAACAATGACTACTAGTAAA
TCTTATAAAAGACCTAGATATTTTTATTCGTTTCTTTAAAATATTAGATT
TCTGTTATATGTTACTTTTAAAGATTTATTTTATTTTTATTACATGTATA
TGTCTGTGTATGCTCAAGAAGGCAGGCATGACAGGCCAGACGTGTCAGAT
CTCCTGGAGCTGGAGTTACATGTGATTGTGAGCCACCTGACATGGGTACT
GGGAGCTGAATTCAGGTTCTCTGCCAGAGTGNTGTGTGATCCTAACCACT
GGGACATCTCTCCAGCTCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no157_e07.b1 MSMg01no157_e07.b1 CHROMAT_FILE:
MSMg01no157_e07.b1 PHD_FILE: MSMg01no157_e07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:22:35 2005
         (229 letters)



>mm_chr4_53656100_53656730
          Length = 631

 Score =  435 bits (225), Expect = e-127
 Identities = 229/231 (99%), Gaps = 2/231 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttctatttttactttgtgatctccccaaattctgctccaatgagaagtattggtgatcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttctatttttactttgtgatctccccaaattctgctccaatgagaagtattggtgatcag 260

                                                                       
Query: 61  tgtgtgttttccccacagcgtacatttatttcccccttgttgttgtggtttctaagagtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtgtgttttccccacagcgtacatttatttcccccttgttgttgtggtttctaagagtc 320

                                                                       
Query: 121 tttaggctc--agagtaatgctgcctctgcaccatttcttatttttctttttctgagagt 178
           |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttaggctctgagagtaatgctgcctctgcaccatttcttatttttctttttctgagagt 380

                                                              
Query: 179 tgataactttataggattttatatgttctagtgctagtaattacacaaata 229
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgataactttataggattttatatgttctagtgctagtaattacacaaata 431


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 229
Length of database: 631
Length adjustment: 9
Effective length of query: 220
Effective length of database: 622
Effective search space:   136840
Effective search space used:   136840
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)