BAC Information

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BAC

Clone NameMSMg01-157H01
Chromosome4 (Build37)
Map Location 54,832,497 - 54,832,781
singlet/doubletsinglet
Overlap genenone
Upstream geneTmem38b, LOC670124, LOC100041280, LOC666901, LOC100041303
Downstream geneLOC384018, EG666920, Zfp462, LOC670211, Rad23b, LOC666953, LOC100041348, Klf4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-157H01.T7 (MSMg01no157_h01.b1)MSMg01-157H01.TJ (MSMg01no157_h01.g1)
ACCAG357920AG357921
length732745
length of high quality
(start - end)
649 (42 - 690)285 (70 - 354)
definitionCHROMAT_FILE: MSMg01no157_h01.b1 PHD_FILE: MSMg01no157_h01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:47 2005CHROMAT_FILE: MSMg01no157_h01.g1 PHD_FILE: MSMg01no157_h01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTCACCTGTAGCAATACCGAATGGCAGAGAAGCACTTGAAAAAATGTTCA
ACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCA
CCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGAT
GCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGAT
TGCAGGCTTGTACAACCACTCTGGAAATCCGTCTGGCGGTTCCTCAGAAA
ATTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGCATAT
ATCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCACTATGTTC
ATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCCC
CTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATGGAGT
ACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAAATGG
ATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACAAAGGAA
CTCACACAATATGTACTCACTGATAAGTGGATATTAGCCCAAATCCTAGG
ATACCCAAGATATAAGATACAATTTCCTAAACACATGANACTCAAGAAAA
ATGAAGACTGAAGTGTGGACACTATGCCCCTC
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTTTATCTGGGATTTCATCTAATTCACTCTTA
CTTGATGGCATTACTGTGAGATTTGTAGTTTTTGATGGAGTTGTATGTGT
TGCCTTGGTTTTTGTGTTTCTTATGTTACTTTGCTTTATGTACAGAGGTT
CACATACCTGGGGTTATTTCATTACTTGGTAATTTTTTCATCAGCTATAT
TCTTTCAGTTGAAGTGTTTGTAATGGTCAAGTGGATGTGTTTTAGTTGAG
GTGAATAGTTCAGGAAATATTTTCTTAGTCTAGAGGCTCAAAATGCCTGG
TGTGTTTTTTTTCTCCCCCCCCCCCCAGAATGTCATCTGCCAGAATAAGT
TTAACTGCACCCCACAAAAAAAAAATAAAAACTGTTGTAGGACAGAAACC
CCAATTTTTCATAAACATAACAACAACTTCCAATAATCCCAATCCCAATT
AAACCCATCCAATCGACTGATTTTCCCACTATCCTACCATCCAACCAAAT
ACATAATTTATTTTTTCCTACGATGTTATTACATTTATTTGTCTACTCGC
TACCACTCTTTTTAACTTATCCCCTACTTTTTTTATTTTTTAGCCTTCTC
TTACCCTTCCTTCTCATCTTTTTTAATTTTTTTTATTCCTTCCTACTTCT
TTCATTCTCCCACCTCTTCTTTTACTCTATTAAAACTTTCCTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no157_h01.g1 MSMg01no157_h01.g1 CHROMAT_FILE:
MSMg01no157_h01.g1 PHD_FILE: MSMg01no157_h01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:22:47 2005
         (285 letters)



>mm_chr4_54832297_54832981
          Length = 685

 Score =  551 bits (285), Expect = e-161
 Identities = 285/285 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttatctgggatttcatctaattcactcttacttgatggcattactgtgagatttgtagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 tttatctgggatttcatctaattcactcttacttgatggcattactgtgagatttgtagt 426

                                                                       
Query: 61  ttttgatggagttgtatgtgttgccttggtttttgtgtttcttatgttactttgctttat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 ttttgatggagttgtatgtgttgccttggtttttgtgtttcttatgttactttgctttat 366

                                                                       
Query: 121 gtacagaggttcacatacctggggttatttcattacttggtaattttttcatcagctata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 gtacagaggttcacatacctggggttatttcattacttggtaattttttcatcagctata 306

                                                                       
Query: 181 ttctttcagttgaagtgtttgtaatggtcaagtggatgtgttttagttgaggtgaatagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 ttctttcagttgaagtgtttgtaatggtcaagtggatgtgttttagttgaggtgaatagt 246

                                                        
Query: 241 tcaggaaatattttcttagtctagaggctcaaaatgcctggtgtg 285
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 tcaggaaatattttcttagtctagaggctcaaaatgcctggtgtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)