XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCC
TGATCTTTCCAAAACTTTTATCATGAATGGGTGTTGGATCTTGTCAAATG
CTTTTTCTGCATCTAACGAGATGATCATGTGGTTTTTGTCTTTGAGTTTG
TTTATATAATGGATTACATTGATGGATTTTCGTATATTAAACCATCCCTG
CATCCCTGGAATAAAACCTACTTGGTCAGGATGGATGATTGCTTTAATGT
GTTCTTGGATTCGGTTAGCGAGAATTTTATTGAGGATTTTTGCATCGATA
TTCATAAGAGAAATTGGTCTGAAGTTCTCTATCTTTGTTGGGTCTTTCTG
TGGTTTAGGTATCAGAGTAATAGTGGCTTCATAAAATGAGTTGGGTAGAG
TACCTTCTACTTCTATTTTGTGAAATAGTTTGTGCAGAATTTTTTTATAT
GTACATTTCAAATGCTATCCCAAAAGTTCCCTATACCCTCCCACTGCCCT
GCTCCCCTAGCCACCCACTCCCGCTTCTTGGCCCTGGCATTCCCCTGTAT
TGGGGCATATAAAGTTTGCAGTACCAAGGGGCCTCTCTTCCCAGTGATGG
CGACTAGGCCATCTTCTGCTACATATGCAGCTGGAGACACAAGCTCTGAG
GGTACTGGTTAGTGCATATTGTTGTTCCACCTATAGGGTTGCAGACCTCT
TCAGCTCCTTGGTGCTTTCTCTAGCTCCTC

CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTTTTAGTGCTTTTGGGAAGAAGCCAATAT
CATGGTCCTTCATCCTACAGATAGGCATATTCAGAAAAGAAATCTAGTAT
TTCATGTTTTGAATAAACTTTACATTTAATATAATATGTTCAAATTCTAC
TAGAACGTTACTCATTTGTATTTATGCTTTAATTTTAAAGGAAAGATTAA
AATTTACTTTGTTATTTTAACTATGAGTAGCAAGTCAGTGTTATGCCAGA
GTCTCTAAAGCAAAATCTAGAAAAAATATTTTAATTTGTTTCCAAGTATA
CAACTCAACATTTTTTTTTACTTTTGATGAAGGTTAAATTTTTTAAGAAT
TAAAACACAACAGTTTCATGGAATTAAAACAGGAAAACCCCTATAGAATG
TGCAAGTATTGGCATTCTGAGAAAGATGATATTATATCCACTATGTGAGG
AGTGTAGTGACCTGAAATAGTTGTGCTTGTGTAACTACTAAAATTAAACT
GAGTCACAGTTACTATAGAGATTGGCAAGTTCTTTTAAAATTTCCCATGC
TTAAATTTTCTCTAATATACAACCCATAAAATATACAACCCATAAAAAGA
AGGGATATAAAGAGGTATCAAGTTTCTAGTATACAAAGAACATTTTCATT
CTATCTGCTAGTTTTCAAGGTGAAAGTCAACCCAC

Query= MSMg01no157_p03.g1 MSMg01no157_p03.g1 CHROMAT_FILE:
MSMg01no157_p03.g1 PHD_FILE: MSMg01no157_p03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:23:23 2005
         (665 letters)



>mm_chr4_78287221_78288289
          Length = 1069

 Score = 1239 bits (641), Expect = 0.0
 Identities = 661/669 (98%), Gaps = 4/669 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttttagtgcttttgggaagaagccaatatcatggtccttcatcctacagataggcatat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 869 tttttagtgcttttgggaagaagccaatatcatggtccttcatcctacagataggcatat 810

                                                                       
Query: 61  tcagaaaagaaatctagtatttcatgttttgaataaactttacatttaatataatatgtt 120
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 809 tcagaaaagaaatctagtatttcatgttttgaataaattttacatttaatataatatgtt 750

                                                                       
Query: 121 caaattctactagaacgttactcatttgtatttatgctttaattttaaaggaaagattaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 caaattctactagaacgttactcatttgtatttatgctttaattttaaaggaaagattaa 690

                                                                       
Query: 181 aatttactttgttattttaactatgagtagcaagtcagtgttatgccagagtctctaaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 aatttactttgttattttaactatgagtagcaagtcagtgttatgccagagtctctaaag 630

                                                                       
Query: 241 caaaatctagaaaaaatattttaatttgtttccaagtatacaactcaaca---ttttttt 297
           ||||||||||||||| |||||||| |||||||||||||||||||||||||   |||||||
Sbjct: 629 caaaatctagaaaaattattttaacttgtttccaagtatacaactcaacatttttttttt 570

                                                                       
Query: 298 ttacttttgatgaaggttaaattttttaagaattaaaacacaacagtttcatggaattaa 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 ttacttttgatgaaggttaaattttttaagaattaaaacacaacagtttcatggaattaa 510

                                                                       
Query: 358 aacaggaaaacccctatagaatgtgcaagtattggcattctgagaaagatgatattatat 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 aacaggaaaacccctatagaatgtgcaagtattggcattctgagaaagatgatattatat 450

                                                                       
Query: 418 ccactatgtgaggagtgtagtgacctgaaata-gttgtgcttgtgtaactactaaaatta 476
           ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 449 ccactatgtgaagagtgtagtgacctgaaataggttgtgcttgtgtaactactaaaatta 390

                                                                       
Query: 477 aactgagtcacagttactatagagattggcaagttcttttaaaatttcccatgcttaaat 536
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 aactgagtcacagttactatagagattggcaagttcttttaaaatttcccatgcttaaat 330

                                                                       
Query: 537 tttctctaatatacaacccataaaatatacaacccataaaaagaagggatataaagaggt 596
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 tttctctaatatacaacccataaaatatacaacccataaaaagaagggatataaagaggt 270

                                                                       
Query: 597 atcaagtttctagtatacaaagaacattttcattctatctgctagttttcaaggtgaaag 656
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 atcaagtttctagtatacaaagaacattttcattctatctgctagttttcaaggtgaaag 210

                    
Query: 657 tcaacccac 665
           |||||||||
Sbjct: 209 tcaacccac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 665
Length of database: 1069
Length adjustment: 10
Effective length of query: 655
Effective length of database: 1059
Effective search space:   693645
Effective search space used:   693645
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)