BAC Information

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BAC

Clone NameMSMg01-157P17
Chromosome4 (Build37)
Map Location 35,683,696 - 35,683,982
singlet/doubletsinglet
Overlap geneLingo2
Upstream geneGm136, 1810030N24Rik, Zfp292, Cga, Mobkl2b, Ifnk, 3110043O21Rik, LOC620559, LOC621227
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-157P17.T7 (MSMg01no157_p17.b1)MSMg01-157P17.TJ (MSMg01no157_p17.g1)
ACCAG358318AG358319
length736730
length of high quality
(start - end)
695 (38 - 732)288 (68 - 355)
definitionCHROMAT_FILE: MSMg01no157_p17.b1 PHD_FILE: MSMg01no157_p17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:23:26 2005CHROMAT_FILE: MSMg01no157_p17.g1 PHD_FILE: MSMg01no157_p17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:23:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTT
GTTCAGTCCTGAGCCCCATTTTTAATGGGGTTATTTGAATTTCTGGAGTC
CAGCTTCTTGATCTCTTTGTATATATTGGATACAAGTCCCCTATCAGATT
TAGGATTGGTAAAAATCCTTTCCCAATCGGTTGGTGGCCTTTTTGTCTTA
TTGACAGTGTCTTTTGCCTTACAGAAACTTTGCAATTTTTGGGGGGTCCC
ATTTGTCAATTCTTGATCTTACCACACAAGCCATTGTTCTTCTGTTTCGG
AATTTTTCCCCTGTGCCCATATCTTTGAGGCTTTTCCCCACTTTCTCCTC
TATAAATTTCACTGTCTCTGGTTTTATGAGGAGGTCTTTGATCCACGTAG
TCTTGAGCTTTGTACAAGGACATAAGAATGGATCAATTCGCATTCTTCTA
CATGATAACTGCTAGGTGTGCCAGTACCATTTGTTGAAAATGCTGTCATT
CTTCCACTGGATGGTTTTAGCTGTCTTGTCAAAGATCAAGTGACCATAGG
TGTGTGCATTCATTTCTGGGTCTTCGACAAATGGATGTATCTGGAGGATA
TCATCCTTAGTGAGGTAACCCAAAAGACAAAAGAGGTCACTAGATATGTC
CTCTCTCATAAGTGGATATTAGCCCAGAAACTTAGAATACCCAAGATACA
ATTTTCAAAACATAATAAAATCAAGAAGAAGGAAGA
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXACCAGTTAAGTTGAAATTATTCTTTTGTTTTTC
TTGATGGCTCTTTGTGTAAGAAAGGTGATGAATCTAGTGATGAAAATGAA
TCTAGTGATGAAAACAGTGTTAATTTTTTAATTAAAAATGCTGTGACTGA
CATTTAATTACTGCCTACTCCCTGTGTTTCCAAATATTAGTGGTCAAAAG
TTTCACTTAATAATCTAAAGGAATATAGCTTTTGTACTTAGAATTGTTTT
TTGATTGAACTATAACTATATAATGTCCTTTCTATATTCCCCTTACCCTA
CCCTTTTTTCTTTCCCCCCCCCCCTTATTTATTTATGTTTCAAATGTTAT
CCTCTTTCCAGGTTTCCCATCTGCAAACTCGCTATCCTATCTCCCCCACT
TCTATGAAGCCCCCATCCACTTACCCACTCCTGCCTCACCGCCCTAGCAT
TCCTCTACATTGGGGCATCAAGCCTTCACAGGACCAAGGGCCTCTCCTCC
TGTTGATGCCAGATAAGGCCCCTTCAGCTCCTTCAGTCCTTGCCCTAAAT
CATCCACTGGGGTCCCTGTGCTCAGTCCGATGGTTGGCTGTGAGCATCAG
CATCTTCATTGGTCAGAATCTGGCAGAGCCTCTCAGGAGACAGCTGTAGC
TGTATCAGGCTCCTGTCAGCAAGCACTTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no157_p17.g1 MSMg01no157_p17.g1 CHROMAT_FILE:
MSMg01no157_p17.g1 PHD_FILE: MSMg01no157_p17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:23:26 2005
         (288 letters)



>mm_chr4_35683496_35684183
          Length = 688

 Score =  540 bits (279), Expect = e-158
 Identities = 285/287 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   accagttaagttgaaattattcttttgtttttcttgatggctctttgtgtaagaaaggtg 60
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 accagttaagttgaagttattcttttgtttttcttgatggctctttgtgtaagaaaggtg 428

                                                                       
Query: 61  atgaatctagtgatgaaaatgaatctagtgatgaaaacagtgttaattttttaattaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 atgaatctagtgatgaaaatgaatctagtgatgaaaacagtgttaattttttaattaaaa 368

                                                                       
Query: 121 atgctgtgactgacatttaattactgcctactccctgtgtttccaaatattagtggtcaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 atgctgtgactgacatttaattactgcctactccctgtgtttccaaatattagtggtcaa 308

                                                                       
Query: 181 aagtttcacttaataatctaaaggaatatagcttttgtacttagaattgttttttgattg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 aagtttcacttaataatctaaaggaatatagcttttgtacttagaattgttttttgattg 248

                                                          
Query: 241 aactataactatataatgtcctttctatattccccttaccctaccct 287
           ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 247 aactataactatataatgtcctttctatattccccctaccctaccct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)