XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTCACT
TTTTTCTTTCTTTCCTATGAGAATGTTATGATGATACATTTGTTCCAACT
AATGCATATGTTACCATTAAATGAATGCCAGGCTTCCTTCAGATTTTACA
GCTTTTGACTAGGGTCTTATCTTTGTCCAGGATCCTTCCAAAAATATTAC
ATTTAGTCAATATCTATTTTGGAATGGAAGAATAAATTCTATTGCACCCC
CATCAGTGAAAAGCTTCTGTACACATTCCCACAGAACATAGTCATAGGCA
AAATTGTGTGTACTTGTTTGCTGATTAGAAATTTTAGTTTAGTAACTATA
TATGGTATGAATCCCCAGGTGGGACAGTCTCTGGATGGCTTTTCCTTCAG
TCTCTGCTCTATACTTTATCTCCGTATTTGCTCCTGTGAATATTTTGTTT
TCATTCTAAGAAGGACCAAAGCACCTACACTTTGGTCTTCCTTCTTCTTG
AGCTTTATGTGGTCTGTGAATTGTATATTAAGTATTTGGAGCAGTTACAA
AACTCAGACACTATTGTAGATGCCAAGAAGTTCATGCTGACAGGAACCTG
ATATAGCTGGCTCCTGAGAGGCCCTGCCAGAGCCTTATAAATACAGAGGT
GGATGCTCACAGCCAACCATTGGACTAAGCGCGGGGTCCTCAATAAAGAG
TTAGAG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTAAGGACTCTTGAAAGGGTATATAAATGCTACACAT
TGCTGAGAGGGCATTGCTGCTACTGGTGGTGGTGGTGCTGCTGGTAGTGG
TTGCTAGTTGCTGGATGCTGTTTTGTGGTTTGTTGAAGTTTCACAAGTGG
TCTTGTGTAAAGAAGCGAGAAGAAGAAATCAGATATCCCGATGGCAAATA
TCAAATTTGCCCCAAGGACCCCCTTAATCATCAGGGAATAGTCTAATGAT
ATTGACTCTCTATCCTTTCTCTCCTAGCTCGTGTTGGGGGGTTAGAAGGA
TAGTATATTGGTGCCACCCCCCCCCCCTNTTTTTTNTTTTTTTTTTTTTT
TTTTTTTTTCCCCCCCCTAAAAAAAAAAAAAATATATTGTTGTGTGTGTT
CTCCCTTTTTTTTCTTCTTTCCGTTGTCCTTTTCCCCCTTTCTACCCCTC
TTCAACCTTTCTTTTCTCTTTCTTCTTTTATAATTTTATCCTTTTCCCTC
TTATCTCGTTACACTTCTCCTCTTTTCCCTTCATTTATATCTCACAACTT
TACCCTTACCTCTTTTTTTTTTTCTCTCCTATCTCCTTTTCCCCTTTTTT
CTCCATTTCCCTTTTTTAATTTTTTATCTTCTTTCACCTTTTTCTTTTAT
TTATTCTGACCATTCCACTTTTATTTCTTTTTTTTCTTCCCTTATTTCTC
TTTATTCCTTCCCTTCCCCTTTTGCG

Query= MSMg01no158_c03.b1 MSMg01no158_c03.b1 CHROMAT_FILE:
MSMg01no158_c03.b1 PHD_FILE: MSMg01no158_c03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:23:37 2005
         (516 letters)



>mm_chr4_35419803_35420718
          Length = 916

 Score =  959 bits (496), Expect = 0.0
 Identities = 511/516 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   taaatgaatgccaggcttccttcagattttacagcttttgactagggtcttatctttgtc 60
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 201 taaatgaatgccaggcttccttcagattttacagcttttgactaaggtcttatctttgtc 260

                                                                       
Query: 61  caggatccttccaaaaatattacatttagtcaatatctattttggaatggaagaataaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caggatccttccaaaaatattacatttagtcaatatctattttggaatggaagaataaat 320

                                                                       
Query: 121 tctattgcacccccatcagtgaaaagcttctgtacacattcccacagaacatagtcatag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctattgcacccccatcagtgaaaagcttctgtacacattcccacagaacatagtcatag 380

                                                                       
Query: 181 gcaaaattgtgtgtacttgtttgctgattagaaattttagtttagtaactatatatggta 240
           ||||||||||||||||  |||||||||||||||||||||||||||||||||||||||| |
Sbjct: 381 gcaaaattgtgtgtacaagtttgctgattagaaattttagtttagtaactatatatggga 440

                                                                       
Query: 241 tgaatccccaggtgggacagtctctggatggcttttccttcagtctctgctctatacttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgaatccccaggtgggacagtctctggatggcttttccttcagtctctgctctatacttt 500

                                                                       
Query: 301 atctccgtatttgctcctgtgaatattttgttttcattctaagaaggaccaaagcaccta 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 501 atctccgtatttgctcctgtgaatattttgttttcattctaagaaggaccaaagcatcta 560

                                                                       
Query: 361 cactttggtcttccttcttcttgagctttatgtggtctgtgaattgtatattaagtattt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cactttggtcttccttcttcttgagctttatgtggtctgtgaattgtatattaagtattt 620

                                                                       
Query: 421 ggagcagttacaaaactcagacactattgtagatgccaagaagttcatgctgacaggaac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggagcagttacaaaactcagacactattgtagatgccaagaagttcatgctgacaggaac 680

                                               
Query: 481 ctgatatagctggctcctgagaggccctgccagagc 516
           ||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctgatatagctggctcctgagaggccctgccagagc 716


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 516
Length of database: 916
Length adjustment: 10
Effective length of query: 506
Effective length of database: 906
Effective search space:   458436
Effective search space used:   458436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)