BAC Information

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BAC

Clone NameMSMg01-158C19
Chromosome4 (Build37)
Map Location 18,056,598 - 18,056,879
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040173, Mmp16
Downstream geneLOC667251, LOC435772
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-158C19.T7 (MSMg01no158_c19.b1)MSMg01-158C19.TJ (MSMg01no158_c19.g1)
ACCAG358461AG358462
length712710
length of high quality
(start - end)		282 (423 - 704)638 (64 - 701)
definitionCHROMAT_FILE: MSMg01no158_c19.b1 PHD_FILE: MSMg01no158_c19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:23:39 2005CHROMAT_FILE: MSMg01no158_c19.g1 PHD_FILE: MSMg01no158_c19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:23:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGTCATT
GCTTACAAAAATCATCACTATCCTTTTCTTGCTGTCAGAGGGACATGGTT
CTTAAATTTTCTCACTTAATTGTGGCATTAGATAATATTTATTGCTGTTC
CACCAAGTCTTGTTTGTTCTTGGTCTTCCCTTCGTACTTCTCACACTTGT
TCACATAAACACTCACCAGCACTCAGAGGCTTAGATGGTATTTCAGACAC
CTTATTTCTCTTTGTCTTTATTCTACATCTTGTTTCCTATATCAGTCCTT
CCCAATTCATTTTCATTTCTGGCATAAGTATCTTCCCTCACTGGACAAAG
TTATATTACAGCACTATCACAAAGAGATAACCTTTAAAATATTTAATAAT
ATTTGCCACCGCGTGACGGAATGTGCATGAATGTGAAGGCCAGAGTGATT
CTTCTTATCATTTTCCCTTTTCCTCCCTTGAGAAGAAGAATATTATTGTA
CCAGTTGTCGTGTTAGCAATCAACTGTCCCCAGTAAGTTCCCTACCCACT
GTGCATCTATGCCCAGATTTTTACTTGGGTGCTGGAGATCTAAGGTCATG
GTGTCAATTGTGCATAGCAAAAGTACTTACACACTGAGCCTTCTCTCCAG
CCTGAAGAACAAAGATTTTATATGTATACTCTCCAAAATTTATTCTCTAC
TTATCTTTTGAG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXACTCTTGCACCTGCGTACAAGGCTTGTTTACTAGTTA
GGCACAGCAGAGGCCCACGCCATCTTATAATGGCGATTGCTCGTGGCACA
CACGGCTCTCCTCAGAGATTACTGGCGGCACACATGCGATTGCGTGCAGC
ACGTACCAGCTCTCCACACAAGTGAGCCTATTTATTTTTGTGAATCTTTG
TTTGAAATTGATTATTTTTGGAGGCGACCTCAGCATCAGCAGCAGCAGTC
GCCATCTGGGTTCCGGGACTCCGCAGGACCTAGGAAATTAGTCTGAACAG
GTTAGAGGGTGCACCAGAGAACCGAACAGCTTCTGGGACGGGCGGAAGCA
CAGAGCCGCTGAGGCAGCAGCCTGGGCGGGCCGCAGACAACCGGCCACCA
TCCGGACCAGAGGACAGGTGTCCGCCTGGCTTGGGAGGCGACCTCAGCCT
CAGCAGCAGCAGTCGCCATCTTGGTTCCGGGACTCAGCAGAATTTAGGAA
ATTAGTCTGAACAGGTTAGAGGGTGCGCCAGAGAACCGGACAGCTTCTGG
GACGGGCAGAAGCACAGAGCCGCTGAGGCAGCAGCCTGGGCGGGCCGCAG
ATAACCGGCCACCATCCAGACCAGAGGACAGGTGTCCGCCTGGCTCGGGA
GACGGCCTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no158_c19.b1 MSMg01no158_c19.b1 CHROMAT_FILE:
MSMg01no158_c19.b1 PHD_FILE: MSMg01no158_c19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:23:39 2005
         (282 letters)



>mm_chr4_18056398_18057079
          Length = 682

 Score =  507 bits (262), Expect = e-148
 Identities = 277/282 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtgcatgaatgtgaaggccagagtgattcttcttatcattttcccttttcctcccttgag 60
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 201 gtgcatgaatgtgaaggccagagtgattcttcttatcatttttccttttcctcccttgag 260

                                                                       
Query: 61  aagaagaatattattgtaccagttgtcgtgttagcaatcaactgtccccagtaagttccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 261 aagaagaatattattgtaccagttgtcgtgttagcaatcaactgtccccaggaagttccc 320

                                                                       
Query: 121 tacccactgtgcatctatgcccagatttttacttgggtgctggagatctaaggtcatggt 180
           ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct: 321 tacccactgtgcatctatgcctagatttttacttgggtgctggagatctaagatcatggt 380

                                                                       
Query: 181 gtcaattgtgcatagcaaaagtacttacacactgagccttctctccagcctgaagaacaa 240
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtcaattgtgcatagcaaaggtacttacacactgagccttctctccagcctgaagaacaa 440

                                                     
Query: 241 agattttatatgtatactctccaaaatttattctctacttat 282
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agattttatatgtatactctccaaaatttattctctacttat 482


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 682
Length adjustment: 9
Effective length of query: 273
Effective length of database: 673
Effective search space:   183729
Effective search space used:   183729
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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