Query= MSMg01no158_f02.b1 MSMg01no158_f02.b1 CHROMAT_FILE:
MSMg01no158_f02.b1 PHD_FILE: MSMg01no158_f02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:23:49 2005
(316 letters)
>mm_chr4_134014092_134014807
Length = 716
Score = 596 bits (308), Expect = e-175
Identities = 311/312 (99%)
Strand = Plus / Plus
Query: 5 gaattcactatgtacatagcccaggctttcccttgatttgcagcaatccaagcctggggc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcactatgtacatagcccaggctttcccttgatttgcagcaatccaagcctggggc 264
Query: 65 ttcccgaatgtggaggttacaggcacagccaccaccagttcatactgctcacctcttgtt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttcccgaatgtggaggttacaggcacagccaccaccagttcatactgctcacctcttgtt 324
Query: 125 tgtattttgctcattcggagaagactggctggaggaagcggtggaaagcaatcacccagc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgtattttgctcattcggagaagactggctggaggaagcggtggaaagcaatcacccagc 384
Query: 185 tacttcgttacagaaatggccccagttgaggcgacaagactctccatgcaaggtggtgtc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tacttcgttacagaaatggccccagttgaggcgacaagactctccatgcaaggtggtgtc 444
Query: 245 ctgagttagatcttggaacagaaaaaaaaagatagagagagaccccaacaggaagatgga 304
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 445 ctgagttagatcttggaacagaaaaaaaaagagagagagagaccccaacaggaagatgga 504
Query: 305 ggagccagctca 316
||||||||||||
Sbjct: 505 ggagccagctca 516
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space: 217049
Effective search space used: 217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no158_f02.g1 MSMg01no158_f02.g1 CHROMAT_FILE:
MSMg01no158_f02.g1 PHD_FILE: MSMg01no158_f02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:23:50 2005
(111 letters)
>mm_chr4_134150595_134151105
Length = 511
Score = 192 bits (99), Expect = 8e-54
Identities = 108/111 (97%)
Strand = Plus / Minus
Query: 1 ttacccatgctaccccagccactgtgaattcttacgcatgctaccccagccactgtgaat 60
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 ttacgcatgctaccccagccactgtgaattcttacgcatgctaccccagccactgtgaat 252
Query: 61 tcttacccatgctaccccagccactgtgaattcttacccatgctaccccag 111
|||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 251 tcttacgcatgctaccccagccactgtgaattcttacgcatgctaccccag 201
Score = 165 bits (85), Expect = 1e-45
Identities = 91/93 (97%)
Strand = Plus / Minus
Query: 1 ttacccatgctaccccagccactgtgaattcttacgcatgctaccccagccactgtgaat 60
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 ttacgcatgctaccccagccactgtgaattcttacgcatgctaccccagccactgtgaat 221
Query: 61 tcttacccatgctaccccagccactgtgaattc 93
|||||| ||||||||||||||||||||||||||
Sbjct: 220 tcttacgcatgctaccccagccactgtgaattc 188
Score = 145 bits (75), Expect = 7e-40
Identities = 81/83 (97%)
Strand = Plus / Minus
Query: 29 ttcttacgcatgctaccccagccactgtgaattcttacccatgctaccccagccactgtg 88
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 314 ttcttacgcatgctaccccagccactgtgaattcttacgcatgctaccccagccactgtg 255
Query: 89 aattcttacccatgctaccccag 111
||||||||| |||||||||||||
Sbjct: 254 aattcttacgcatgctaccccag 232
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 5
Length of query: 111
Length of database: 511
Length adjustment: 8
Effective length of query: 103
Effective length of database: 503
Effective search space: 51809
Effective search space used: 51809
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
