CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTCCTGCCAAAATGTATAAAAACATGTTTAAACTCATTCTGAGTT
TATATAATACAGTTAGTATGAATCTACATCACATTTGAGAATAGACTAAA
TAAATATGGACATGAAATATTTTTTGCATGTTGATTTTATTTCATTTACA
TGCACACACATACACATGCATGCACGAACACAAACATATACTCAGGAAAT
AGTGGTTCATATATATTCCATTTATTGAGAATTTCCATACTGTTTTCCAT
AATAGGTGTACTAATTTACATATTCAATTAAAGTTATTAGAGTGACAATT
TGTAAAAATCCTTATCAGTATTTGCCAACTTTTCTCATAATTTTGCATGT
GGCAAGATATTTGTATACCCCTCTCATTAACATAAATAATGATTGATGAT
AATTTTAATATATTTGTTGTTCATTTGTTTTCCTTTTTGTAAAGGCATAT
TAAGACATTTTCTCCAATATAACTGTATTTTCATTAGTTAGTTGAGTTCC
TTGCATAATTTTGTTATAAACTTCTCTATGATGAAGAATAATAAATGATT
TTTTTTTCCTTTTCACTAGGTCATCTTCTACTCTTTTGCCCATTCCCTCT
ACAGAGGACCCTTTTTTCAGAATTATCCGACATTAATCAATTACTTAATT
TATCTCACTT

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAATAAATATAATTAGAGATATTTA
ATAATTGTTGAGTTATTTGTTATTTATAAAGATCACTAGATATTGCTAAA
TTTCAATCTCATTAGAAACTATTCCTCCTTCTTCTAGGTCTGTGCTGATT
ATGATGAAAAAAAACTTTACTACCACTCTACAGGGGTTGCATAAATTATT
CTTAGGACTTTTCTGTTTTTAATTGGAAAACCTTTAACCTATCTTGATAT
CTTGATTATACACACACACACACACACACACACGCACGCACACACGTGTG
TGTGTGTGATTATATATACCCCGCTGGATATATGAAACTTATTGCATAAG
ACATAACACTCATGCACAAATATAATTTTCTGAATTCATAAATGAGATAC
ATTTTAAAATCATGAAACTGTAATTATGCCCTGTTTTGTTACTGGTATAT
CGTGTCAAGTGAGTACATGAAACTTGATTTGAGGAGGACAAAAGGAGGGT
TGAATTTTCACAGGAAGTGTATGGGTAAGTATTAGCAAGACTAATGTTGC
TGTGTTTTCTACTGATGAAGTTTTTGAAAAGAACATATTTAATATAAATA
AAACTTATTTTTATTGATAAAACATTTTATATTTTTTATGTACAATGCTA
TCGGCATCATTATTTATGGTTCATTGTC

Query= MSMg01no158_f17.b1 MSMg01no158_f17.b1 CHROMAT_FILE:
MSMg01no158_f17.b1 PHD_FILE: MSMg01no158_f17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:23:52 2005
         (318 letters)



>mm_chr4_27731592_27732309
          Length = 718

 Score =  584 bits (302), Expect = e-171
 Identities = 311/314 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttcctgccaaaatgtataaaaacatgtttaaactcattctgagtttatataat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttcctgccaaaatgtataaaaacatgtttaaactcattctgagtttatataat 264

                                                                       
Query: 65  acagttagtatgaatctacatcacatttgagaatagactaaataaatatggacatgaaat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 acagttagtatgaatctacatcacatttgagaatagactaaataaatatggacatgaaat 324

                                                                       
Query: 125 attttttgcatgttgattttatttcatttacatgcacacacatacacatgcatgcacgaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 attttttgcatgttgattttatttcatttacatgcacacacatacacatgcatgcacgaa 384

                                                                       
Query: 185 cacaaacatatactcaggaaatagtggttcatatatattccatttattgagaatttccat 244
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cacaaacatatactcaggagatagtggttcatatatattccatttattgagaatttccat 444

                                                                       
Query: 245 actgttttccataataggtgtactaatttacatattcaattaaagttattagagtgacaa 304
           ||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct: 445 actgttttccataataggtatactaatttatatattcaattaaagttattagagtgacaa 504

                         
Query: 305 tttgtaaaaatcct 318
           ||||||||||||||
Sbjct: 505 tttgtaaaaatcct 518


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no158_f17.g1 MSMg01no158_f17.g1 CHROMAT_FILE:
MSMg01no158_f17.g1 PHD_FILE: MSMg01no158_f17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:23:52 2005
         (283 letters)



>mm_chr4_27888788_27889470
          Length = 683

 Score =  516 bits (267), Expect = e-151
 Identities = 276/279 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aataaatataattagagatatttaataattgttgagttatttgttatttataaagatcac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 aataaatataattagagatatttaataattgttgagttatttgttatttataaagatcac 374

                                                                       
Query: 61  tagatattgctaaatttcaatctcattagaaactattcctccttcttctaggtctgtgct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 373 tagatattgctaaatttcaatctcattagaaactattcctccttcttctaggtctatgct 314

                                                                       
Query: 121 gattatgatgaaaaaaaactttactaccactctacaggggttgcataaattattcttagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 gattatgatgaaaaaaaactttactaccactctacaggggttgcataaattattcttagg 254

                                                                       
Query: 181 acttttctgtttttaattggaaaacctttaacctatcttgatatcttgattatacacaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 acttttctgtttttaattggaaaacctttaacctatcttgatatcttgattatacacaca 194

                                                  
Query: 241 cacacacacacacacacgcacgcacacacgtgtgtgtgt 279
           ||||||||||||| ||||||||||||||||| |||||||
Sbjct: 193 cacacacacacacgcacgcacgcacacacgtatgtgtgt 155


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space:   184676
Effective search space used:   184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)