Query= MSMg01no158_g19.b1 MSMg01no158_g19.b1 CHROMAT_FILE:
MSMg01no158_g19.b1 PHD_FILE: MSMg01no158_g19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:23:57 2005
(234 letters)
>mm_chr4_116397715_116398348
Length = 634
Score = 439 bits (227), Expect = e-128
Identities = 230/231 (99%)
Strand = Plus / Minus
Query: 1 atacactaaaatgaaagacacgcccagtgagtagagcccagaactgtgagaaaccatcag 60
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 431 atacactaaaatgaaagacacacccagtgagtagagcccagaactgtgagaaaccatcag 372
Query: 61 ctttttaagggggaaaaaaaaaacattatatatattcatgtttggaagcatttacctaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 ctttttaagggggaaaaaaaaaacattatatatattcatgtttggaagcatttacctaaa 312
Query: 121 caaagtctaaaagaatgcaaagacagctgggttgtggtggtctgtcctgtatgccaggaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 caaagtctaaaagaatgcaaagacagctgggttgtggtggtctgtcctgtatgccaggaa 252
Query: 181 gtcagaagttgaaggttgtcctcaaaatcccttcttcaaaaataaaaatgg 231
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 gtcagaagttgaaggttgtcctcaaaatcccttcttcaaaaataaaaatgg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space: 140625
Effective search space used: 140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no158_g19.g1 MSMg01no158_g19.g1 CHROMAT_FILE:
MSMg01no158_g19.g1 PHD_FILE: MSMg01no158_g19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:23:57 2005
(290 letters)
>mm_chr15_41864697_41865390
Length = 694
Score = 480 bits (248), Expect = e-140
Identities = 277/288 (96%), Gaps = 8/288 (2%)
Strand = Plus / Minus
Query: 1 tcttttcttcctgacccttatcttttctacttataattttgctttgaatgtataaatagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 tcttttcttcctgacccttatcttttctacttataattttgctttgaatgtataaatagt 427
Query: 61 aaagaccaaagaaatagggatatatatttaggagctttataccaagaaatttgccttgaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 aaagaccaaagaaatagggatatatatttaggagctttataccaagaaatttgccttgaa 367
Query: 121 agctgctattctgtggcaggaaaactatatcaagtttctattggattccttttt-caaaa 179
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct: 366 agctgctattctgtggcaggaaaactatatgaagtttctattggattccttttttcaaaa 307
Query: 180 aacaaaacaagacttcttatatctttagatttt-gaaggttaaaact-ataaaa-gcaca 236
||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |||||
Sbjct: 306 aacaaaacaagacttcttatatctttagatttttgaaggttaaaactgataaaaagcaca 247
Query: 237 tctctctgca--caatgctttaagcagttgtgtgagatagtgagattt 282
|||||||||| | |||||||||||||||||||||||| ||| ||||
Sbjct: 246 tctctctgcatgc--tgctttaagcagttgtgtgagataatgaaattt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 694
Length adjustment: 9
Effective length of query: 281
Effective length of database: 685
Effective search space: 192485
Effective search space used: 192485
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
