BAC Information

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BAC

Clone NameMSMg01-158I14
Chromosome4 (Build37)
Map Location 115,124,736 - 115,125,045
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666048, Foxd2, LOC100040736, Foxe3, Cmpk, Stil, Tal1, Pdzk1ip1, Cyp4x1, Cyp4a21-ps, LOC384042, LOC230639, Cyp4a12, LOC546842, Cyp4a12b
Downstream geneLOC435802, LOC666393, LOC230641, Cyp4a14, Cyp4a10, LOC666168, LOC631037, LOC100040843, Cyp4b1, LOC546843, 4732418C07Rik, 4930544O15Rik, Atpaf1, Mobkl2c, Mknk1, Kncn, 6430628N08Rik, Dmbx1, Faah, Nsun4, Uqcrh, Lrrc41, Rad54l, 1520402A15Rik, Pomgnt1, Tspan1, 1700042G07Rik, LOC433748, Pik3r3, Mast2, LOC631400
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-158I14.T7 (MSMg01no158_i14.b1)MSMg01-158I14.TJ (MSMg01no158_i14.g1)
ACCAG358725AG358726
length695702
length of high quality
(start - end)
314 (35 - 348)284 (66 - 349)
definitionCHROMAT_FILE: MSMg01no158_i14.b1 PHD_FILE: MSMg01no158_i14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:24:04 2005CHROMAT_FILE: MSMg01no158_i14.g1 PHD_FILE: MSMg01no158_i14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:24:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAAAGCT
GTTAGATTTGATCACAGGGCTCATCAGATCATATTTTCCTATAGTTATGA
GCAGGTACCTTGCAGCAAATGTCTGTGTATGTGTGAGCTCTCTCTGTGTG
TTTCTAGGCTTCAGAAATGAAATGGTCAGCTTCTAGTGATGAGACATTTC
TCTTTATTCATGATAGCTTGGTCCTCATAGCTGATATGGGGATTTCTGCT
AAGGTGTGTATGCTGCCCAATCAGTACACTTTAAAGTGTCTGTGTCCATA
TCTCCCTGTATCTTCTAAGTTGCACAGTAACCAGGTTCATTCCTTACCAT
TTCTTAGTTCCCCCATCCGCTTTTCTTCTTCCTCTCAACAGCTTTTATTA
TTTACTCACCCATTTATTGAATATATGTATAACCATGGGTGTGTGTATGG
ATAGGCATGCTCATGTGAGTGTTGGTACCCAGGGAGGTCAACAATGTTGC
TGAGCTAGCTCTGGAGCTAGCGTTATGGGTCCTCTTTAAGAGCAGTAAGA
CTCTTAACTACAAAGCCATCTTACCATCTCCCCAGATGGACATTATTTTA
TTTTTTACTTTTCTGGGTGTTTTCAAAATCCTCTCATTCTTTTTGGACTC
ACCACAACTCTCTGTGTGAAAAAAAAATCTTGTGTCTGTCTTGCT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTCATCTGAGGAATACCGAATGGCAGAGAAGCACCT
GAAAAAATGTTCAACACCCTTAATTATCAGGGAAATGTAAATCAAGCCAA
CCCTGAGATTCCATCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCA
GGTGGCAGCAGATGCTGGCAAGGATGTGGAAAAGAGGAACACTCCTCCAT
TGTTGGTGGGATTGCAAGCTTTTACAACCACTCTGGAAATAAATCTGGCG
GTTCCTTAGAAAAGTGGACATAGTACTACTGGAGGATCCCGCAATACCTC
TCCTGTATCTTACCCCCACCACCATGTCCCAACTGATAATAAGGACTTAT
GCTCCAGCACGCCCATAGAAGCCTTATTTATAATAGCCAGAACCTGGAAA
GAACCCAGATGCCCCTCAACAGAGGAATGGATAAAAAAAATGTGGTACAT
TTACACAATGGACTACTACTCAGCTATTAAAAAGAATGAATTTATGAAAT
TCCTAGGCAAATGAATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACT
CAATCACAAAAGAACTCATATGATATGTACTCACTGATAAGTGGATATTA
GCCCAGAATCTTAGTATAGCCCATGAATCTGAAGAAGAACGAAGACCAAA
GT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no158_i14.b1 MSMg01no158_i14.b1 CHROMAT_FILE:
MSMg01no158_i14.b1 PHD_FILE: MSMg01no158_i14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:24:04 2005
         (314 letters)



>mm_chr4_115124532_115125245
          Length = 714

 Score =  600 bits (310), Expect = e-176
 Identities = 310/310 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaaagctgttagatttgatcacagggctcatcagatcatattttcctatagttat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 gaattcaaagctgttagatttgatcacagggctcatcagatcatattttcctatagttat 455

                                                                       
Query: 65  gagcaggtaccttgcagcaaatgtctgtgtatgtgtgagctctctctgtgtgtttctagg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 gagcaggtaccttgcagcaaatgtctgtgtatgtgtgagctctctctgtgtgtttctagg 395

                                                                       
Query: 125 cttcagaaatgaaatggtcagcttctagtgatgagacatttctctttattcatgatagct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 cttcagaaatgaaatggtcagcttctagtgatgagacatttctctttattcatgatagct 335

                                                                       
Query: 185 tggtcctcatagctgatatggggatttctgctaaggtgtgtatgctgcccaatcagtaca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tggtcctcatagctgatatggggatttctgctaaggtgtgtatgctgcccaatcagtaca 275

                                                                       
Query: 245 ctttaaagtgtctgtgtccatatctccctgtatcttctaagttgcacagtaaccaggttc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 ctttaaagtgtctgtgtccatatctccctgtatcttctaagttgcacagtaaccaggttc 215

                     
Query: 305 attccttacc 314
           ||||||||||
Sbjct: 214 attccttacc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space:   215025
Effective search space used:   215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)