BAC Information

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BAC

Clone NameMSMg01-158J12
Chromosome4 (Build37)
Map Location 143,926,553 - 143,926,878
singlet/doubletsinglet
Overlap genenone
Upstream geneLrrc38, LOC621961, Pramel1, 4732496O08Rik, Oog4, LOC666015, LOC626700, OTTMUSG00000010207, LOC100040854, LOC100040861, BC080695, LOC666049, LOC279185, LOC277668, LOC100040924, OTTMUSG00000010333, LOC277666, OTTMUSG00000010009, OTTMUSG00000010328, OTTMUSG00000010433, LOC195555, LOC194224, LOC626889, LOC329984, LOC626922, LOC626943, LOC100041127, LOC436146, Pramel4, LOC100041077, LOC100041144, Oog3, Oog2, C87977, Pramel5, LOC666150, LOC626995
Downstream geneOTTMUSG00000010537, EG627009, Pramef12, D530049N12Rik, 1700012P22Rik, Aadacl3, 9430007A20Rik, LOC100041232, LOC666194, LOC627085, LOC666215, LOC435815, Gm436, LOC546849, Gm438, LOC666242, LOC676844, Dhrs3, Vps13d, Tnfrsf1b, Tnfrsf8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-158J12.T7 (MSMg01no158_j12.b1)MSMg01-158J12.TJ (MSMg01no158_j12.g1)
ACCAG358766AG358767
length730739
length of high quality
(start - end)
309 (46 - 354)241 (76 - 316)
definitionCHROMAT_FILE: MSMg01no158_j12.b1 PHD_FILE: MSMg01no158_j12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:24:08 2005CHROMAT_FILE: MSMg01no158_j12.g1 PHD_FILE: MSMg01no158_j12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:24:08 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
TTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAAGACTTGGAGTGACAGAGGAATTTGAGCCAACATATGAGTCCT
TGGAATTGAACCCCAGTCCTCTAGAAGAATATCCAGTGCATTTAGATGCT
AAGACACCTCTCCATTCCTTCATTTACAAAATTTTTGTAATCTTTTATTT
TCTACAATGATACATGCATGATAAATGTAAGCACTTCCCCATTGAACTAT
ATCCCAAGCCCTTTCATAATTTCTTGAGTAATATATATATATTCATTCAT
GCATTCATGTTTATGTTACTCTATAATGCAGGGTGCTCAGGGGTTCTTGG
AGTATATTGTTTAGCGCCACCCCCAGGGAACCTGCCTGCCTGCCTTAGAG
TTTGGTTACCCCCACGAACCAGCAGAAATAGGTTTTTTCTATGAGTAGGG
ATTGGACATGCATCCAGAACTAGCCTCTAACTCATGCTGTGAACACTGCT
GCTTCTAATAAGTGACACTCCATCCTTAACATCATAGTGTATCACCAAGC
CTGGTCCATAAACCAGGTCTGAAACATTCACATTGGATAAGACAAGCATC
AATAATTTTGTGTCACCTTAAGTAGGGTATCATCCCTGAAGATTGCCTTC
AGGGATGTAGACTCAGTGGTGACTGCTTGGGGTAACAAATCTTCAGGAAT
TTAAGCAGTTGAATCTAGGTTCTAGGATTG
CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACTAAATAAGAGACTATTAGTGAGC
AGATGCAAATACCATTTCTTTTTTGTATTTTGTGTTTGTTTGCTAGTTTT
TCATTATTTATTTAGTGATGTATCCATTTATTTATTTATTTTTTATTTAT
TTATTTATTTATTTATTTAATATATATGAGTACACTGTCCCTGTCCTCAG
ACACTCCTGAAGAGGGCACCAGAACACATCATGAACGGTTTTGAGCCACC
ATGTAATTACTGGGAATTGATTACAGTACCTCTTTAAGTACACTCAGGGT
TCTTATTTTTTACTCCCCCTCCCCCCCCCCCTTGTTTTGCCTTTCTAAAA
GACATATATAACCCCCCCCAAATTAAAATACTCACAGCCTCCCTCTGCCT
TCCTGTTGCTGGGATTAAAAGCCCACCATATAATACCAGGCTTAAAGCGA
CATAAACATCAGTACTCAAGACACTCGAGTATCTTACATCTGATACCCCG
GCCAAAACTGCCTATAATTGTAGGTCACCCTGACATTCTTAGTGAGATTG
TCTTATGTATTTTAAACCCACCCTCATTTAACTAACTTATTCTACTGAAC
CCTTCTTTTTCTATTTAATAATCCACATGTCCTCTGATTATTCACTTGTG
TTATTCTGCCATAAACGTCCTTTCTGTTGCCTCGTGTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no158_j12.b1 MSMg01no158_j12.b1 CHROMAT_FILE:
MSMg01no158_j12.b1 PHD_FILE: MSMg01no158_j12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:24:08 2005
         (309 letters)



>mm_chr4_143926314_143927022
          Length = 709

 Score =  472 bits (244), Expect = e-137
 Identities = 296/328 (90%), Gaps = 24/328 (7%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattccaagacttggagtgacagaggaatttgagccaacatatgagtccttggaattg 63
           |||||| ||||||||||||||||  |||||||||||||||||||||||||||||||||||
Sbjct: 565 ggaatttcaagacttggagtgac--aggaatttgagccaacatatgagtccttggaattg 508

                                                                       
Query: 64  aaccccagtcctctagaagaatatccagtgcatttagatgctaagacacctctccattcc 123
           ||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct: 507 aaccccagtcctctagaagaatatccagtgcctttagatgctgagacacctctccattcc 448

                                                                       
Query: 124 ttcatttacaaaatttttgtaatcttttattttctacaatgatacatgcatgataaatgt 183
           |||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct: 447 ttcatttacaaaatttttataatcttttattttctacgatgatacatgcatgataaatgt 388

                                                                       
Query: 184 aagcacttccccattgaactatatcccaagccctttcataatttcttgagta-------- 235
           ||||||||||||||||||||||||||||||||||||||||||||||||||||        
Sbjct: 387 aagcacttccccattgaactatatcccaagccctttcataatttcttgagtaatatatat 328

                                                                       
Query: 236 --------------atatatatatattcattcatgcattcatgtttatgttactctataa 281
                         |||||||||||||||||||||||||||||||||| |||||||||| 
Sbjct: 327 atatatatatatatatatatatatattcattcatgcattcatgtttatcttactctatag 268

                                       
Query: 282 tgcagggtgctcaggggttcttggagta 309
           ||||||| ||||||||||||||||||||
Sbjct: 267 tgcagggagctcaggggttcttggagta 240


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 309
Length of database: 709
Length adjustment: 9
Effective length of query: 300
Effective length of database: 700
Effective search space:   210000
Effective search space used:   210000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)