BAC Information

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BAC

Clone NameMSMg01-159D04
Chromosome4 (Build37)
Map Location 11,413,058 - 11,413,401
singlet/doubletsinglet
Overlap gene1110037F02Rik
Upstream gene1700123O12Rik, LOC383991, LOC100039656, LOC545589, 2610301B20Rik, LOC383992, LOC100039746, Plekhf2, 2310030N02Rik, LOC546828, LOC666897, Trp53inp1, Ccne2, Ints8, Dpy19l4, Rbm35a, LOC634834
Downstream geneLOC100039847, E130016E03Rik, LOC100039862, Gem, Cdh17, Ppm2c, Tmem67, C430048L16Rik, LOC230010, LOC623671, LOC100039958, Rbm12b, 6720467C03Rik, LOC545592
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-159D04.T7 (MSMg01no159_d04.b1)MSMg01-159D04.TJ (MSMg01no159_d04.g1)
ACCAG359205AG359206
length729731
length of high quality
(start - end)
315 (46 - 360)344 (381 - 724)
definitionCHROMAT_FILE: MSMg01no159_d04.b1 PHD_FILE: MSMg01no159_d04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:24:52 2005CHROMAT_FILE: MSMg01no159_d04.g1 PHD_FILE: MSMg01no159_d04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:24:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACTTTGTAGACCACGCTGGCCTCGAACTCAGAAATCTGCCTGCCT
CTGCCTCCTGAGTGCTAGGATTAAAGGCGTGTGCCACCACACGCCTTTTT
TTTTTTTTAAACATTTCTTTTCTTCTCTTTCTTTCTTTCTTTTTTTTCTT
AGTAATAGGTATTTATTAGGTTAATTCTTTGATAACATGAGGAAAGAGCA
TTGAAAATAAGATAAGGTCACCTAACAGAATTTTTTAAAAATATTTTTTA
TTATGTATTTTCCTCAATTACATTTCCAATGCTATCCCAAAAGTCCCCCA
TTCCCTCCTTTTTTTTCCCCTCCCCCCCCACTCCCACTTTTTGGCCCTGG
CATTCCCCTGTACTGGCCCATATAAAGAATGAATGTCCAATGGGCCTCTC
TTTGCAGTGATGGCCGACTAGGCCATCTTTTGATACATATGCAGCTAGAG
TCAAGAGCTCCGGGATACTGGTTAGTTCATAATGTTGTTGCACCTATAGG
GTTGCAGAACCCTTTAGCTCCTTGGATACGTTCTCTAGCTCCTCTTCTTT
CTTTCTTTTTTTTTTTTTTTAAAGATTTATTTATTTATTATATGCAAGTA
CACTGGAGCTGTCTGAAGACACTCCAGAAGAGGGCGCCAGATCTTGTCAC
GAATGGTTGTGAGCCACTGTGTGGTTGCT
CCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTTCCCAAACTATTGAAGTGCTA
TGACAAATTGAGCAATGAGATCGCCGTTAGAAGAGAGATAGAAGAGGACT
TAGGATCCTGGATAGTCCGTACCCTGAGGGCATCCAGAACCCAACACTAC
TGTCAAAAACCAGATGCCCAAGCTCACGCCTGCATCCCACCCGAAGTACA
CCTGAGACCAAGGACCCTCCGCAGGACTCAACGCTGACAGGACAAACTGT
CAGCAGCGCGACTGACTCGACTGAAGCCGCGGGCCCCAAATCAAAGCCGA
GAAAGGCAGGTTTTTCGCCCAGGGCCACCGGGCTCGCACCGGGCTGGGGG
AGGGGGTGTGGACCAGAGGACCCCCGCGCGCGCGCGACTGAGGGAGGACA
CCGCCCGGACGGCCCCCGACTCCGCAGCAGGGGTACCGGAACTGAGGGAC
CGTGTCGAAATCGGGTCGCGAGGCCTTACCTCAGCGCTCGGATGTTTAAA
AGTATCTAAAAATAGCAGCTCCATAGACGAGTCCACCGCCATGTCTGCCG
CGGGCGGGGGACCGGGAGATGACTTCCGGGGCAGCTCTCCAACCTCCCAG
GCCGAGGCTCCGGCTAGGGGGAAAACTGCAGTACTTCCGGTAAACAGGAC
GCCGTCGTCGCAAGCCTCCACCAATCCCATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no159_d04.g1 MSMg01no159_d04.g1 CHROMAT_FILE:
MSMg01no159_d04.g1 PHD_FILE: MSMg01no159_d04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:24:52 2005
         (344 letters)



>mm_chr4_11412858_11413601
          Length = 744

 Score =  634 bits (328), Expect = 0.0
 Identities = 340/344 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggctcgcaccgggctgggggagggggtgtggaccagaggacccccgcgcgcgcgcgactg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 ggctcgcaccgggctgggggagggggtgtggaccagaggacccccgcgcgcgcgcgactg 485

                                                                       
Query: 61  agggaggacaccgcccggacggcccccgactccgcagcaggggtaccggaactgagggac 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 484 agggaggacaccgcccggacggcccccgactccgcagcaggggtaccggaactgaggggc 425

                                                                       
Query: 121 cgtgtcgaaatcgggtcgcgaggccttacctcagcgctcggatgtttaaaagtatctaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 cgtgtcgaaatcgggtcgcgaggccttacctcagcgctcggatgtttaaaagtatctaaa 365

                                                                       
Query: 181 aatagcagctccatagacgagtccaccgccatgtctgccgcgggcgggggaccgggagat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 aatagcagctccatagacgagtccaccgccatgtctgccgcgggcgggggaccgggagat 305

                                                                       
Query: 241 gacttccggggcagctctccaacctcccaggccgaggctccggctagggggaaaactgca 300
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 304 gacttccggggcagctctccaacctcccaggccgaggctccagctagggggaaaactgca 245

                                                       
Query: 301 gtacttccggtaaacaggacgccgtcgtcgcaagcctccaccaa 344
           |||||||||||||||||||||| |||||| ||||||||||||||
Sbjct: 244 gtacttccggtaaacaggacgctgtcgtctcaagcctccaccaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 744
Length adjustment: 9
Effective length of query: 335
Effective length of database: 735
Effective search space:   246225
Effective search space used:   246225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)