BAC Information

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BAC

Clone NameMSMg01-159G18
Chromosome4 (Build37)
Map Location 64,494,913 - 64,611,517
singlet/doubletdoublet
Overlap genenone
Upstream geneTnfsf8, Rpl17-ps, Tnc
Downstream genePappa, Astn2, Trim32
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-159G18.T7 (MSMg01no159_g18.b1)MSMg01-159G18.TJ (MSMg01no159_g18.g1)
ACCAG359359AG359360
length751753
length of high quality
(start - end)
324 (42 - 365)304 (73 - 376)
definitionCHROMAT_FILE: MSMg01no159_g18.b1 PHD_FILE: MSMg01no159_g18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:09 2005CHROMAT_FILE: MSMg01no159_g18.g1 PHD_FILE: MSMg01no159_g18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:09 2005
singlet/doubletdoubletdoublet
BLAST hituniqueplural
Map location.(64,494,913 - 64,495,229)(64,611,215 - 64,611,517)
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CAAGGACTGACCCTGGTTGAGTTTCTAGGCCGGGGTCTTCCATGGCGTTA
CAGAAGAATCAGGTCTCTTCACTTCAAGGTCCTGCAAATGATATTTGTAT
TTGGAACTCTGTTCAGTACCTCATATTCTGTCATTTTGTGTTACTTGATA
CTTTTCTATAGATTAGCGTCAAGCAAATTATATCTTCTGCTGTTCCTCTC
CTAGTTCCGAAGTAAATCACTGACACTCTGATGCTCAGACATCTGGTTGT
CCAACAAGGAGAACAAATCCAACTAAATTTGCATTTGTTCTCTGGACAGG
AGGTTACAATTTTTTTATGAACCACCCCCATCATGCTCTAGATAGCTTTT
TTTCCATCTTTACACCCCATGACAGGAATCTTAGAGGGAAACCCTATAAA
GAACGAATTTGTCCAGTTTAGGTTTTCTTCTCTTTCATATTTTAATGCTT
AGATAAACCAAATGTCCTTAGTCAGCACTCTCACTTTTCTGGAATAAAAT
TCAAGTGTAGACAGACAGTCTGATAAAGGATTTAAAATTTTCATAAGCAA
AGATGTCTAAAGAAGGAAGGCTCACCAGTGTTGAGGAGGGCAGCTTAATT
GAGATATGTTGATTTTAATTTATTATTATCCTTATTAAATCCCTCCTTGC
TTATTTTCTTTTTTTTTTTTGTTTTATATTCCAAAAATATTTTTTATTTC
C
TGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXACAGAAGTAACATATAAGATATGACAAG
CTATGATGTTTGACTACAGAATCTAAGTCCCATTATTTCAGTTCACAAAT
TGTAAACCCAACTTCTATTTTCTTTAAGGAAAATATTTTGCATTTTATGA
AGGTGGTCCATTTATAATGGCACAAAAACACTCTTAGTCTTTACCATGAA
AGGAAGACCTTTTCCCCCAAAATCATCAGCTGGTAGTTTGTTACAAAGAA
GCAAGCAAGCTGTGGACCCACAGCTTCTTTGTTCAGGATGGTGTCAATTA
GAAGCCTTTACTTTCTTCTATTCCTCGCCAAAGCCAATGACACAAAAGCC
AGAGTGCTACCACTTCCTCAGACTCTCCACATAATCCAGGCATCATAGAA
GAGCTCAAAAGACTTCTTCCTTTTTTTTTCTAAGAAAAGTCCATTTTATT
TCAATTGCTAATTGTATATTCAATATTTACTTAAGATTATAGTTCAAATA
ATTCTACTTAATCTAACTTTTCTTTTACAAATGAAACAATTGATACCTTG
AGATTTCATGTAAATTAAACAAAGTCATTTGGCAAGTCAGTATAAATGCC
ATTTTAATATGATTTTCAGTGATATGGAACAATTTGGACCCCACACTTTT
TATTTTTTATTTTAATTTTTTTCCTTTTCCAATTTTTATTAGGCATTTAC
GCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no159_g18.b1 MSMg01no159_g18.b1 CHROMAT_FILE:
MSMg01no159_g18.b1 PHD_FILE: MSMg01no159_g18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:25:09 2005
         (324 letters)



>mm_chr4_64494709_64495432
          Length = 724

 Score =  605 bits (313), Expect = e-177
 Identities = 316/317 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaaggactgaccctggttgagtttctaggccggggtcttccatggcgttacagaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaaggactgaccctggttgagtttctaggccggggtcttccatggcgttacagaa 264

                                                                       
Query: 65  gaatcaggtctcttcacttcaaggtcctgcaaatgatatttgtatttggaactctgttca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gaatcaggtctcttcacttcaaggtcctgcaaatgatatttgtatttggaactctgttca 324

                                                                       
Query: 125 gtacctcatattctgtcattttgtgttacttgatacttttctatagattagcgtcaagca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gtacctcatattctgtcattttgtgttacttgatacttttctatagattagcgtcaagca 384

                                                                       
Query: 185 aattatatcttctgctgttcctctcctagttccgaagtaaatcactgacactctgatgct 244
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 385 aattatatcttctgctgttcctctcctagttccgaagtaaatcactgacactctaatgct 444

                                                                       
Query: 245 cagacatctggttgtccaacaaggagaacaaatccaactaaatttgcatttgttctctgg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cagacatctggttgtccaacaaggagaacaaatccaactaaatttgcatttgttctctgg 504

                            
Query: 305 acaggaggttacaattt 321
           |||||||||||||||||
Sbjct: 505 acaggaggttacaattt 521


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 724
Length adjustment: 9
Effective length of query: 315
Effective length of database: 715
Effective search space:   225225
Effective search space used:   225225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no159_g18.g1 MSMg01no159_g18.g1 CHROMAT_FILE:
MSMg01no159_g18.g1 PHD_FILE: MSMg01no159_g18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:25:09 2005
         (304 letters)



>mm_chr4_64611015_64611718
          Length = 704

 Score =  563 bits (291), Expect = e-165
 Identities = 300/303 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   acagaagtaacatataagatatgacaagctatgatgtttgactacagaatctaagtccca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 503 acagaagtaacatataagatatgacaagctatgatgtttgactacagaatctaagtcccg 444

                                                                       
Query: 61  ttatttcagttcacaaattgtaaacccaacttctattttctttaaggaaaatattttgca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ttatttcagttcacaaattgtaaacccaacttctattttctttaaggaaaatattttgca 384

                                                                       
Query: 121 ttttatgaaggtggtccatttataatggcacaaaaacactcttagtctttaccatgaaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ttttatgaaggtggtccatttataatggcacaaaaacactcttagtctttaccatgaaag 324

                                                                       
Query: 181 gaagaccttttcccccaaaatcatcagctggtagtttgttacaaagaagcaagcaagctg 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 323 gaagaccttttcccccaaaatcatcagctggtagtttgttacaaagaagcaagcaaactg 264

                                                                       
Query: 241 tggacccacagcttctttgttcaggatggtgtcaattagaagcctttactttcttctatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 263 tggacccacagcttctttgttcaggatggtgtcaattagaagcctttactttcatctatt 204

              
Query: 301 cct 303
           |||
Sbjct: 203 cct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 304
Length of database: 704
Length adjustment: 9
Effective length of query: 295
Effective length of database: 695
Effective search space:   205025
Effective search space used:   205025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)