BAC Information

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BAC

Clone NameMSMg01-159P24
Chromosome4 (Build37)
Map Location 23,480,503 - 23,514,880
singlet/doubletdoublet
Overlap genenone
Upstream gene1700025O08Rik, LOC625462, LOC383998
Downstream geneLOC100040464, LOC623873, LOC664973, F730047E07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-159P24.T7 (MSMg01no159_p24.b1)MSMg01-159P24.TJ (MSMg01no159_p24.g1)
ACCAG359784AG359785
length742742
length of high quality
(start - end)		680 (47 - 726)622 (76 - 697)
definitionCHROMAT_FILE: MSMg01no159_p24.b1 PHD_FILE: MSMg01no159_p24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:50 2005CHROMAT_FILE: MSMg01no159_p24.g1 PHD_FILE: MSMg01no159_p24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:50 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(23,480,503 - 23,481,179)(23,514,502 - 23,514,880)
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTTGCCATGTCTCTAATGTCAAAATTTTACAGGTGTCTTTTACC
TTGAGTCCTGAAGGTTTCCAGAGGCCACATGAATTCCTCATGTACTTGAA
AATGAAGTCATTGTGAATCCAAACATAAATGAACCTTCAGAAGAGGGCAA
AGGATGTCAAATGTACAGCTTGCCACTGTTGTTGGGCCAACTTTCCTTAT
GCTGGGTCAGTGACCTCTGTGCCCAGGACTGTCAAGGAAGATGGTCTGAG
CGACAACAGGTTTCCCAGAACCCTTGATCCTGCCTAAGACAGGAGACCTG
GTGTGCCCTATGATCTGCATAGCAATGGAGTCAAGAAAATGGGCAGTTGC
CAGGGGATTTTTTTCTGAGATTTGACTAGCCGTTTTATATTATCTTTCAC
TTTATCGGTGATGAATATAAATTCATCTACACAACTGGAGAGCTGGATTG
ATGGGTCTTAAAAGTCTTAACTTGGTTTCAAGTTATCACAGCTTTATTTA
CTGTTTTATGATATCATATAAATATGTTCTTATAAACCATCTGAACATTA
ATATGAGATCAGTAAGAAAATTTTAACCATAATTTTAGTAAATTACCTGG
AAGGAATTACCTGTATACCAGTTTTGCTTTTACATCCCAGATTTTAAAAA
ATCTGTTTTAAAAATCTAAAATTCAATAAAGTCATTACTGAA

CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATTGCTTTTAATAGCAAATCTTTCT
AATGGTTTGGTACATAACACAAGACAGACAACTTAAATTAGTCTTGCATC
TTTAAAATCTGTACATATTTATCAGTCAAAAATTCAGAGAGAAAGAAATT
TCTACTTATATGCTACAAGGCTTTTCTTGGGGTAAGTATGAATAAATACA
TGTTCACCCAAGATAAGGCATTAATAAGAAAAAAACAAAGAAACAAGTCT
ACCTAAGACCAGTTTAATGGTCCAGAACATTTGTTAGGGTTTAACTTGTA
GGGTTACTTGTAGGGTAATAAATGACTTACAGGACAATCATGGGTGACTC
TAAGGCAACTATATCACCAGATAGCCCACCAGAATGTGTGATGACTCATA
AGAGCTGTATGTCAGGAACTCCCTGCTCAGCTCACAGGTAGCTGTGCTGA
TAAGAGACTCTCCTCTCCTCTCCCTAGCAACTGTTACTAGCAACTTAACC
TCTGGGAATAGGGGAGAGGAATTTTTGTGAGTCTTTTAACTTTCAGAAGT
TTCCCGAGATTTTGTTTATTTTCTGGGTTTTATATGATTCAACTCCTTCC
TGGAGTCTCCTTGCCTTCCTTCTCTATCCAAAAGGGGATTTTTTTTCAGT
GAAAATAGTTACACACCACTATATAAGGCCAAGAAAAATTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no159_p24.b1 MSMg01no159_p24.b1 CHROMAT_FILE:
MSMg01no159_p24.b1 PHD_FILE: MSMg01no159_p24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:25:50 2005
         (680 letters)



>mm_chr4_23480300_23481379
          Length = 1080

 Score = 1309 bits (677), Expect = 0.0
 Identities = 677/677 (100%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctttgccatgtctctaatgtcaaaattttacaggtgtcttttaccttgagtcct 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctttgccatgtctctaatgtcaaaattttacaggtgtcttttaccttgagtcct 263

                                                                       
Query: 64  gaaggtttccagaggccacatgaattcctcatgtacttgaaaatgaagtcattgtgaatc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gaaggtttccagaggccacatgaattcctcatgtacttgaaaatgaagtcattgtgaatc 323

                                                                       
Query: 124 caaacataaatgaaccttcagaagagggcaaaggatgtcaaatgtacagcttgccactgt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 caaacataaatgaaccttcagaagagggcaaaggatgtcaaatgtacagcttgccactgt 383

                                                                       
Query: 184 tgttgggccaactttccttatgctgggtcagtgacctctgtgcccaggactgtcaaggaa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tgttgggccaactttccttatgctgggtcagtgacctctgtgcccaggactgtcaaggaa 443

                                                                       
Query: 244 gatggtctgagcgacaacaggtttcccagaacccttgatcctgcctaagacaggagacct 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gatggtctgagcgacaacaggtttcccagaacccttgatcctgcctaagacaggagacct 503

                                                                       
Query: 304 ggtgtgccctatgatctgcatagcaatggagtcaagaaaatgggcagttgccaggggatt 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ggtgtgccctatgatctgcatagcaatggagtcaagaaaatgggcagttgccaggggatt 563

                                                                       
Query: 364 tttttctgagatttgactagccgttttatattatctttcactttatcggtgatgaatata 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tttttctgagatttgactagccgttttatattatctttcactttatcggtgatgaatata 623

                                                                       
Query: 424 aattcatctacacaactggagagctggattgatgggtcttaaaagtcttaacttggtttc 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 aattcatctacacaactggagagctggattgatgggtcttaaaagtcttaacttggtttc 683

                                                                       
Query: 484 aagttatcacagctttatttactgttttatgatatcatataaatatgttcttataaacca 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 aagttatcacagctttatttactgttttatgatatcatataaatatgttcttataaacca 743

                                                                       
Query: 544 tctgaacattaatatgagatcagtaagaaaattttaaccataattttagtaaattacctg 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 tctgaacattaatatgagatcagtaagaaaattttaaccataattttagtaaattacctg 803

                                                                       
Query: 604 gaaggaattacctgtataccagttttgcttttacatcccagattttaaaaaatctgtttt 663
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 gaaggaattacctgtataccagttttgcttttacatcccagattttaaaaaatctgtttt 863

                            
Query: 664 aaaaatctaaaattcaa 680
           |||||||||||||||||
Sbjct: 864 aaaaatctaaaattcaa 880


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 680
Length of database: 1080
Length adjustment: 10
Effective length of query: 670
Effective length of database: 1070
Effective search space:   716900
Effective search space used:   716900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no159_p24.g1 MSMg01no159_p24.g1 CHROMAT_FILE:
MSMg01no159_p24.g1 PHD_FILE: MSMg01no159_p24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:25:50 2005
         (622 letters)



>mm_chr4_23513859_23514880
          Length = 1022

 Score =  710 bits (367), Expect = 0.0
 Identities = 376/379 (99%)
 Strand = Plus / Minus

                                                                        
Query: 243  tggtccagaacatttgttagggtttaacttgtagggttacttgtagggtaataaatgact 302
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1022 tggtccagaacatttgttagggtttaacttgtagggttacttgtagggtaataaatgact 963

                                                                        
Query: 303  tacaggacaatcatgggtgactctaaggcaactatatcaccagatagcccaccagaatgt 362
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 962  tacaggacaatcatgggtgactctaaggcaactatatcaccagatagcccgccagaatgt 903

                                                                        
Query: 363  gtgatgactcataagagctgtatgtcaggaactccctgctcagctcacaggtagctgtgc 422
            ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 902  gtgatgactcataagagctgtgtgtcaggaactccctgctcagctcacaggtagctgtgc 843

                                                                        
Query: 423  tgataagagactctcctctcctctccctagcaactgttactagcaacttaacctctggga 482
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 842  tgataagagactctcctctcctctccctagcaactgttactagcaacttaacctctggga 783

                                                                        
Query: 483  ataggggagaggaatttttgtgagtcttttaactttcagaagtttcccgagattttgttt 542
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 782  ataggggagaggaatttttgtgagtcttttaactttcagaagtttcccgagattttgttt 723

                                                                        
Query: 543  attttctgggttttatatgattcaactccttcctggagtctccttgccttccttctctat 602
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722  attttctgggttttatatgattcaactccttcctggagtctccttgccttccttctctat 663

                               
Query: 603  ccaaaaggggatttttttt 621
            ||| |||||||||||||||
Sbjct: 662  ccagaaggggatttttttt 644


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 622
Length of database: 1022
Length adjustment: 10
Effective length of query: 612
Effective length of database: 1012
Effective search space:   619344
Effective search space used:   619344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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