BAC Information

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BAC

Clone NameMSMg01-160A04
Chromosome4 (Build37)
Map Location 11,911,675 - 11,911,906
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039746, Plekhf2, 2310030N02Rik, LOC546828, LOC666897, Trp53inp1, Ccne2, Ints8, Dpy19l4, Rbm35a, LOC634834, 1110037F02Rik, LOC100039847, E130016E03Rik, LOC100039862, Gem, Cdh17, Ppm2c
Downstream geneTmem67, C430048L16Rik, LOC230010, LOC623671, LOC100039958, Rbm12b, 6720467C03Rik, LOC545592, OTTMUSG00000004461
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-160A04.T7 (MSMg01no160_a04.b1)MSMg01-160A04.TJ (MSMg01no160_a04.g1)
ACCAG359792AG359793
length736737
length of high quality
(start - end)
234 (121 - 354)285 (74 - 358)
definitionCHROMAT_FILE: MSMg01no160_a04.b1 PHD_FILE: MSMg01no160_a04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:51 2005CHROMAT_FILE: MSMg01no160_a04.g1 PHD_FILE: MSMg01no160_a04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:51 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATA
TCATCAACACTCACATAACAAACCTGGTGTGGCTGTTTACATCGGTAACT
CCAGAGCTTGTGTCCCCGAATCCCTGGGACTTGCTGGCTTGTCATTTTAG
CCAAACTGGTAAGATTCAGGCTTAATAAGAGACATTATCAAAAACAGGGA
TTATTAGAGGAAAGGACTTCATGTTGACCTTTGTTTTCCACAAGCACACA
CATGCATACATACACATGCATACACATGTAAACACACATCAAACAATAAA
GTAAATTTAAAAAAAAAACCCTGAAAGTATGAGCCAAAATTAATCTTTCC
TCATTTTGTTTCCACCGCCCCCCGTCTTCATAACTATTCTATTACTATGA
AGAGACACCCCGAAGGCATGGAGCATGAAGAGTTGCATGAAGAGTTGCAT
GAAGGCAACTCTTATGAAAGTTTCAGAGGGTTACTCTTTTATTATGGTGG
GGAGCATGGTGGGAGCATGGCAGCACACATGGCGCTAGAGCAGTAGCTGA
GAGCTACATCCTGATCCATTGGCACCAGAGAGAGAGGGAGTGGTCGTTAG
AGAGGTTATTATCCTCCTCTCCTCCTCCCTCCCCCCCACTTCTCCCTCCC
CTCCCCTATATACATCCCCTCTCTCTCCCCCTCTTCCCTTCCTTCTTTTT
ACTCTCCCCCCTCCCCTGTATCCTCCATTCCATTTG
CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTTGGCCTTGGCTCCAAGCTCCGCTTC
CCGCTCTTTGCGAGACTTGAATCTACCCACAAACACTTGCTGGTCATTGA
GAAGCATGCCATTCATCTTCTCGATGACCTTGTCGGCGGCCTCTTGGGTC
TCGAAGTGAACAAAAGCATAGCCCTTAGAGCCGTTCTCATCACAGACCAC
CTTACAGGACAAGATGTTTCCAAAGGCAGAGAAAGTGTCATACAGTGCCT
TGTTGTCTATGGATTTGTCCAGGTTCTTGATGAAGACATTTCCCACCCCA
GACTTTCTCATATAGGCACCCCCCTGCGACCACATGATGCGGACTGGCTT
TCCCTTCATGACCCCCAAATTCATGAAGACCAAGGCCCTCTCAGCGTCGG
CTGGCTGCTGGAAGTTGACGTAGGCATAACCCAGAGAGCGCCCGGTGATC
ATATCGCGACAGACCCGGATGGATAGCACAGGTCCCACAGGCCTGAACTT
TTCATACAGCATGTCTTTGGTGACGTCCGATTGCAAATCGCCCACGTATC
AGGAGGCCATGGGTAAGCTGCTGTCTTGCAGCGTTCATCTTCCCATCCTA
CACGTCCCCGATCCCCGTCTTGGATCACCTCTGACCTCCTTGACCAATCT
TCCTTTCCTCAATATTCTTCCCAACAATCTATGCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no160_a04.b1 MSMg01no160_a04.b1 CHROMAT_FILE:
MSMg01no160_a04.b1 PHD_FILE: MSMg01no160_a04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:25:51 2005
         (234 letters)



>mm_chr4_11911475_11912108
          Length = 634

 Score =  420 bits (217), Expect = e-122
 Identities = 229/233 (98%), Gaps = 1/233 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tccctgggacttgctggcttgtcattttagccaaactggtaagattcaggcttaataaga 60
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 201 tccctgggacttgctggcttgtcattctagccaaactggtaagattcaggcttaataaga 260

                                                                       
Query: 61  gacattatcaaaaacagggattattagaggaaaggacttcatgttgacctttgttttcca 120
           ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 261 gacattatcaaaaacagagattattagaggaaaggacttcatgttgatctttgttttcca 320

                                                                       
Query: 121 caagcacacacatgcatacatacacatgcatacacatgtaaacacacatcaaacaataaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caagcacacacatgcatacatacacatgcatacacatgtaaacacacatcaaacaataaa 380

                                                                
Query: 181 gtaaatttaaaaaaaaaaccctgaaagtatgagccaaaattaatctttcctca 233
           ||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtaaatt-aaaaaaaaaaccctgaaagtatgagccaaaattaatctttcctca 432


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)