BAC Information

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BAC

Clone NameMSMg01-160C16
Chromosome4 (Build37)
Map Location 27,457,851 - 27,458,078
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC100040691, Tpm3-rs2, LOC100040842, LOC100040735, LOC230044, LOC665141
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-160C16.T7 (MSMg01no160_c16.b1)MSMg01-160C16.TJ (MSMg01no160_c16.g1)
ACCAG359911AG359912
length713719
length of high quality
(start - end)
229 (122 - 350)280 (75 - 354)
definitionCHROMAT_FILE: MSMg01no160_c16.b1 PHD_FILE: MSMg01no160_c16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:26:03 2005CHROMAT_FILE: MSMg01no160_c16.g1 PHD_FILE: MSMg01no160_c16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:26:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATAT
CTTTCACATCCTGCAGAAGCACACTGGAGCCATTCAGGGTAAAAAAGGAG
AAATGATTTTTTCCATAATTTTGTCCTATAAGCAAATCAATAAATAATGA
GCTTATCACATTATTAATAGTGCTACTGTCAAGAGTAGTTGAGAACCAAT
GTAATGTGTTCAATTTTATATGAGAGGTCATTTTTATATTTTAAAGTATA
GTAAATTAACGTTTTACATATTCACATATGCATATGTTAGACTTCCAGCA
GACATGGAACTTTTAATATTATTGTATTTTTTGAAACTAGTTGAAAAAAT
CATAAGGAAACATTGAACAGGCTTCTCAAGAAAAATGATAAAAAAGGAAA
CAGGCACCCTTTGCAGATATAAGGATGTGTTTTGCTTTATAAATATCCTT
AAGTAATGCTCAGCCTGGAAAGATGCAGGTATGGTGACTAGACATAGGTT
CTGGGAATCTAAATAATTCTCTATTTGCATTATAAATCTGGTCAGTTCTT
TTAGAAGCACATTTCAAATAAATCGTAGAATTAATGTGCTATATCTACAT
TGAGAAATCCAAATTTTTGAGATACCTCTGACCACTGATCAATTGAAAAG
GTATGCATAAATTACAGTGTAATGCTTCTTGCTAAAGGTTTCCTTTGGAA
TATTCAGCTGCAG
CAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTGATATGCTGATCTCCCACAAAACTA
CCTGTTAAGCTTTCTTTCCAGAATTAATGGACACAGGAAAACTGCATATT
CTATGTCTCAAAGCTTTCCCACACCTGTTCTGAAGGTCAGGAATCACATG
GAAACCTTAGTCACAGGAATTACTTTGATTCTTTTACATGAATTTTTCTA
TATTGGGTGCTTTTCACTCTGACATTATGGCTAATCTAAACAAGGGAAGG
TGGGGATATTTTTACTTTCTGGCTATGTGAAAGTGCAGTTTATCATGCTA
AAGAAATGATTGTTGGCACACAGGCCAATGATTTCTGGTACCTGGGAAAC
AGAGAGACAAAGAGCCTCTGAAGACATGTCCCTAATAAATTGATTCTCCA
CTTGGGCCACAACTCTTAATATTTCCAGGTCCAAATCTCCTTTCTGAATC
TAGACATAATTTTCATTGTGTATGTGAATATTAGTGAGAGTTCTAGGTTA
TAAGTTTGATCTATTTTTAATATCTGGAGAAATAATTTCACTATTTTATA
TAAAAGCTCCATACCTTCTTCTAGAAGATAACATCTACTGGATGAGGTAG
TCTGAAATATATTTACAGATATTCTATTATAAAAGCTTCCAAATAATGAT
TACATATTTGATTTTGGAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no160_c16.b1 MSMg01no160_c16.b1 CHROMAT_FILE:
MSMg01no160_c16.b1 PHD_FILE: MSMg01no160_c16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:26:03 2005
         (229 letters)



>mm_chr4_27457651_27458279
          Length = 629

 Score =  426 bits (220), Expect = e-124
 Identities = 226/228 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtcctataagcaaatcaataaataatgagcttatcacattattaatagtgctactgtca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgtcctataagcaaatcaataaataatgagcttatcacattattaatagtgctactgtca 369

                                                                       
Query: 61  agagtagttgagaaccaatgtaatgtgttcaattttatatgagaggtcatttttatattt 120
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggagtagttgagaaccaatgtaatgtgttcaattttatatgagaggtcatttttatattt 309

                                                                       
Query: 121 taaagtatagtaaattaacgttttacatattcacatatgcatatgttagacttccagcag 180
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 taaagtatagtaaattaacattttacatattcacatatgcatatgttagacttccagcag 249

                                                           
Query: 181 acatggaacttttaatattattgtattttttgaaactagttgaaaaaa 228
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 acatggaacttttaatattattgtattttttgaaactagttgaaaaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 229
Length of database: 629
Length adjustment: 9
Effective length of query: 220
Effective length of database: 620
Effective search space:   136400
Effective search space used:   136400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)