BAC Information

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BAC

Clone NameMSMg01-160H03
Chromosome4 (Build37)
Map Location 32,763,843 - 32,930,903
singlet/doubletdoublet
Overlap geneMdn1, Lyrm2, Ankrd6
Upstream geneMap3k7, LOC665218, LOC665228, LOC665232, Bach2, Gja10, Casp8ap2
Downstream geneLOC665298, Rragd, 4933421O10Rik, Ube2j1, LOC100039142, Gabrr2, Gabrr1, Acy1l2, Srrp, Pnrc1, Rngtt
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-160H03.T7 (MSMg01no160_h03.b1)MSMg01-160H03.TJ (MSMg01no160_h03.g1)
ACCAG360115AG360116
length709725
length of high quality
(start - end)
315 (51 - 365)254 (76 - 329)
definitionCHROMAT_FILE: MSMg01no160_h03.b1 PHD_FILE: MSMg01no160_h03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:26:24 2005CHROMAT_FILE: MSMg01no160_h03.g1 PHD_FILE: MSMg01no160_h03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:26:24 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(32,930,592 - 32,930,903)(32,763,843 - 32,764,096)
sequence
NATAATTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCCCAGTAGTTCTGGTCTACCTTCCAAGTTCTGGGTCTATCC
AGATGTGAGCCTTGGTGTCCAGGCCAGCATAAGGAGTTCTTACTCTTTCT
CAGCACCTCTGAAATTCTTCATCTTACTAGAATACAGCTCCACTGAGAGA
GGAAGGCCATGCAAACAGGCAGGGTTGTTCCAGGAATGCAGGGAGAATTT
CAGGGACCATTATGCCAACAAATTAAAGGAAGAAAACTTCCTATTGACAG
TTGCTAAAAGGACAGAGACTCTCATTGCCCTAAGAAGATGGCCCTTATCC
TCCATACATAGTGTATTTTGTACTGCCCCACCCCGCGTCGTCCGCTGGTG
ATCAGTCCATTGAAGAGTAGTCCACTACCTCCCTTTGAAGGGCGTGTGCT
GATGATGTCTCATCGCTTAGCATCCTGTGTACTGTAGGAAATAATACAAT
CCTGAGCAGCCAATTAAATTCCATAAGCCATTTTTAATCACTTTGCTGGT
GGGAACTTTTAAGGAAAGCTGAAGTATGAAGATTACTGTGTCACCACAAA
AGGATTTTTTTCATTAATGAAATCTAATTATTAGAAATAATTGATTACTA
CAAAATATGCCTCAAATAATCTCTCCAAATTACTGGGATTATCGTTATTC
TAAATGGCT
CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACTAGCTGCAGATTGTGTGAACAAA
GCATGCCTGGGCTGGTAGATCTCCACTCTGCTGTGTGTTGGAGGAATAGT
AATTTTCCAAAATAGGTTCTAGGGATGAGATATTGATAGCTGTTAGCAGC
TTGGAACTGATAGCAGCCCTTGATCTGACTTATTACGATTTATGTAGTGA
AATACGCTCAAGTATATATCATGCTGTCCTGGTGTATACTTTTCTTCAAG
GCTAGGATCAAATAAAATTCTAAATAATGTGTATAGGAAATGTGTCCTTG
GCATCTTTTTTTTTTTCCCCCCCCCCCCATCTTTTCATTCTTTTGATGTA
CGCTCATATTTCTTGCCCACCTTCCCTACCTATTTTATGATAAGTTTTAT
TCTCAGTTCCTCGCCAGATCCCCTATTTTGTCGGGAAGACTTTTTCTCAA
TATTTTTTTTTATCCTATTCCATTTTATTCTATCTCCCGGTTTTTTTTTT
TTTCCTTTTTTGTTCTCTATTTCCGCCTTTCTCTATTAATTCCCACCTCT
TTTTTACCAACCCCTACTTTTCTTTATATCTTAATATCTTTTGACCACAC
CTTTTCTTCCCCCCCATTAACCCCCCTCTTTCATTAATTATTTACCCCTG
ATTTTTATATTTTTCCTCCCCTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no160_h03.b1 MSMg01no160_h03.b1 CHROMAT_FILE:
MSMg01no160_h03.b1 PHD_FILE: MSMg01no160_h03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:26:24 2005
         (315 letters)



>mm_chr4_32930389_32931103
          Length = 715

 Score =  565 bits (292), Expect = e-165
 Identities = 307/312 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcccagtagttctggtctaccttccaagttctgggtctatccagatgtgagcctt 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 ggaattcccagtagttctggtctaccttccaagttctgggtctatccagatgtgagcctt 456

                                                                       
Query: 64  ggtgtccaggccagcataaggagttcttactctttctcagcacctctgaaattcttcatc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 ggtgtccaggccagcataaggagttcttactctttctcagcacctctgaaattcttcatc 396

                                                                       
Query: 124 ttactagaatacagctccactgagagaggaaggccatgcaaacaggcagggttgttccag 183
           |||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 395 ttactagaatacagcttcactgagagaggaaggccctgcaaacaggcagggttgttccag 336

                                                                       
Query: 184 gaatgcagggagaatttcagggaccattatgccaacaaattaaaggaagaaaacttccta 243
           ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct: 335 gaatgcagggagaatttcagggaccattatgccaacaaattaaaggaggaaaactttcta 276

                                                                       
Query: 244 ttgacagttgctaaaaggacagagactctcattgccctaagaagatggcccttatcctcc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 ttgacagttgctaaaaggacagagactctcattgccctaagaagatggcccttatcctcc 216

                       
Query: 304 atacatagtgta 315
           ||| ||||||||
Sbjct: 215 atatatagtgta 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no160_h03.g1 MSMg01no160_h03.g1 CHROMAT_FILE:
MSMg01no160_h03.g1 PHD_FILE: MSMg01no160_h03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:26:24 2005
         (254 letters)



>mm_chr4_32763643_32764296
          Length = 654

 Score =  468 bits (242), Expect = e-136
 Identities = 251/254 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   actagctgcagattgtgtgaacaaagcatgcctgggctggtagatctccactctgctgtg 60
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 201 actagctgcagattgtgtgaacaaagcatgcctgggctggcagatctccactctgctgtg 260

                                                                       
Query: 61  tgttggaggaatagtaattttccaaaataggttctagggatgagatattgatagctgtta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgttggaggaatagtaattttccaaaataggttctagggatgagatattgatagctgtta 320

                                                                       
Query: 121 gcagcttggaactgatagcagcccttgatctgacttattacgatttatgtagtgaaatac 180
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 321 gcagcttggaactgatagcagcccttgatctgacttagtacgatttatgtagtgaaatac 380

                                                                       
Query: 181 gctcaagtatatatcatgctgtcctggtgtatacttttcttcaaggctaggatcaaataa 240
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gctcaagtatatatcaggctgtcctggtgtatacttttcttcaaggctaggatcaaataa 440

                         
Query: 241 aattctaaataatg 254
           ||||||||||||||
Sbjct: 441 aattctaaataatg 454


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 254
Length of database: 654
Length adjustment: 9
Effective length of query: 245
Effective length of database: 645
Effective search space:   158025
Effective search space used:   158025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)