Query= MSMg01no160_h18.b1 MSMg01no160_h18.b1 CHROMAT_FILE:
MSMg01no160_h18.b1 PHD_FILE: MSMg01no160_h18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:26:27 2005
(313 letters)
>mm_chr4_15926170_15926882
Length = 713
Score = 590 bits (305), Expect = e-173
Identities = 308/309 (99%)
Strand = Plus / Plus
Query: 5 gaattcaaactggtcttgtcacatcgcagatctgtgtggagagtcctcaaaaactgaaca 64
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 205 gaattcaaactggtcttgtcacatcgcagatctgtgtggagagtcctcaaaacctgaaca 264
Query: 65 ccagctcttctatgataccgttttactatgcatgggtatttacccaaagggtctcaagtc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ccagctcttctatgataccgttttactatgcatgggtatttacccaaagggtctcaagtc 324
Query: 125 aacataacacagacactggcacagcaatacttactacagcactactcaacagccaagctc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aacataacacagacactggcacagcaatacttactacagcactactcaacagccaagctc 384
Query: 185 tggaaccaagttcagtgtccagggaaagaaaacacagcgtagaaaaacactggctctccc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tggaaccaagttcagtgtccagggaaagaaaacacagcgtagaaaaacactggctctccc 444
Query: 245 tccccagacatgagtaaagtcatgcaacaggaaaatggatgtgccagagagaaccatatt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tccccagacatgagtaaagtcatgcaacaggaaaatggatgtgccagagagaaccatatt 504
Query: 305 aagtgaatt 313
|||||||||
Sbjct: 505 aagtgaatt 513
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space: 214016
Effective search space used: 214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no160_h18.g1 MSMg01no160_h18.g1 CHROMAT_FILE:
MSMg01no160_h18.g1 PHD_FILE: MSMg01no160_h18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:26:27 2005
(280 letters)
>mm_chr4_16080993_16081672
Length = 680
Score = 422 bits (218), Expect = e-122
Identities = 253/280 (90%), Gaps = 25/280 (8%)
Strand = Plus / Minus
Query: 1 ctccctatgcaaatgaggcatccccagtgccctggccctggccctggccctagccctggc 60
|||||||||||||||||||||||||||| ||||||||
Sbjct: 622 ctccctatgcaaatgaggcatccccagt------------------------gccctggc 587
Query: 61 cctggccctggccctggccaatgatgtaccctcaccccatagccccaaatcaccctctca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 cctggccctggccctggccaatgatgtaccctcaccccatagccccaaatcaccctctca 527
Query: 121 aggtttacatagcctttgttttccccattaaacaagctgtctcactggtctcactgccat 180
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 aggtttacatagcctttg-tttccccattaaacaagctgtctcactggtctcactgccat 468
Query: 181 ctgaggcctctcagccaccagccattcccatcccactcccccactctgatctgcagtttg 240
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 467 ctgaggcctctcagccaccagccattctcatcccactcccccactctgatctgcagtttg 408
Query: 241 tatgagatggggcctcactgtgcatccctggttggcatgg 280
||||||| ||||||||||||||||||||||||||||||||
Sbjct: 407 tatgagacggggcctcactgtgcatccctggttggcatgg 368
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 680
Length adjustment: 9
Effective length of query: 271
Effective length of database: 671
Effective search space: 181841
Effective search space used: 181841
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
