BAC Information

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BAC

Clone NameMSMg01-160K01
Chromosome4 (Build37)
Map Location 9,834,907 - 9,835,443
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666782, LOC100039584, 4933402J24Rik, Asph, Gdf6
Downstream gene4930448K20Rik, LOC666840, 1700123O12Rik, LOC383991, LOC100039656, LOC545589, 2610301B20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-160K01.T7 (MSMg01no160_k01.b1)MSMg01-160K01.TJ (MSMg01no160_k01.g1)
ACCAG360249AG360250
length685746
length of high quality
(start - end)
177 (76 - 252)537 (127 - 663)
definitionCHROMAT_FILE: MSMg01no160_k01.b1 PHD_FILE: MSMg01no160_k01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:26:38 2005CHROMAT_FILE: MSMg01no160_k01.g1 PHD_FILE: MSMg01no160_k01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:26:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATAGCGTCACCGAGGGGNAGAGAAGCACCCGAAAAAAGGCNCAACACCC
NNAANCATTATGTTCAACGAGGACAAAACAACCCTGAGANNCCACCTCAC
ACCAGNCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGC
GTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGTTATTGCAGG
CTTGTACAACCACTCTGGAGATCAGTCTGGCGGTTCCTCAGAAAACTGGA
CACAGTATTTTTGTTGANCCAGCAACACCNCGCCAGGGCANANANCCAGA
TGATGCCCCACCCCGCCCCCACGGACACATGCTCCACTATGTTCATAGCA
GCCTTACCCCCAATAGCCAGAAGCTGGAAGGAACCCCGACGCCCCTCAAC
AGAGGAAAGGATACAGAAGATGTGGTACATCTACACAATGGAGCACTACT
CACCTATCACAAAGAATGAATTTAAGAACCTCCTGGCCCACCGTATGGAC
CTGGAGGCCATCATCCTGACCGAGGTAACCCATCCCCAAGCGAACTCCCA
CCAAAACGTACTCCCCGGCCACCGCGCACTAACCCCCAGACCACCATTTT
TTTTTTTTTTTACACCCATTTCAAAACACGCGAAACTCACCAACACTGCA
CACCCGCGCGCGAACCCTACGCCCCCGCGTCACAA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTCAGCTGTCACATTCCAAATGCC
ACTCAGCATTGCGTTTTGTCTACCTAGCTGGTATCTCATTAAGAGGAAAG
TAGGGCTCAGGACAACACAAAAGACAAATGAAAAGGAGCACACAAGTGTT
AGTGTGCTTGGATTTGTCCACATCATGGTGAGTGGCAGCCTTCTTTTTAA
AGAGGTCGTGTACTCTTTGTGTACTCTTTGGTTGGTGGTTTTGTCCCTGG
AAGCTCTGTGGGTAAGAAAAGAACTTTACCAACCCTACATCCCATAGCAG
ATTAATATCCAATATATACAAAGAACTCAAGAAGTTAGACTCCAGAGAAC
CAAATAACCCTATTACCAATGGGGTACAGAGCTAGAGAAAGAATTATCAA
CTGAGGAATACAGAATGGCACCTGAAGAAATGTTCAACATCCTTAGTCAT
CAGGGAAATGCAAATTAAAACAACTCTGAGATTCTACCTCACACCAGTGA
GAATGGCTAAGATCAAGGCTCCAGCCACATATGTAGCAGAGAACGGGCTT
GTGGGACATCAATGAGAGGAGAGGCCCTTGGTCCTGTGAAGGCTTGATGC
CCCAGTGTAGGGGAATGCCAAGACAGGGAAGTGGTAGTGAGTGGCTTAGT
TGTTAAGACGACTCTATATCTCCATTCTCCTACTCCGCCCTCTCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no160_k01.g1 MSMg01no160_k01.g1 CHROMAT_FILE:
MSMg01no160_k01.g1 PHD_FILE: MSMg01no160_k01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:26:38 2005
         (537 letters)



>mm_chr4_9834707_9835643
          Length = 937

 Score = 1015 bits (525), Expect = 0.0
 Identities = 534/537 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gctggtatctcattaagaggaaagtagggctcaggacaacacaaaagacaaatgaaaagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gctggtatctcattaagaggaaagtagggctcaggacaacacaaaagacaaatgaaaagg 260

                                                                       
Query: 61  agcacacaagtgttagtgtgcttggatttgtccacatcatggtgagtggcagccttcttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agcacacaagtgttagtgtgcttggatttgtccacatcatggtgagtggcagccttcttt 320

                                                                       
Query: 121 ttaaagaggtcgtgtactctttgtgtactctttggttggtggttttgtccctggaagctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttaaagaggtcgtgtactctttgtgtactctttggttggtggttttgtccctggaagctc 380

                                                                       
Query: 181 tgtgggtaagaaaagaactttaccaaccctacatcccatagcagattaatatccaatata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtgggtaagaaaagaactttaccaaccctacatcccatagcagattaatatccaatata 440

                                                                       
Query: 241 tacaaagaactcaagaagttagactccagagaaccaaataaccctattaccaatggggta 300
           |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||
Sbjct: 441 tacaaagaactcaagaagttagactccagagaaccaaataaccctattaaaaatggggta 500

                                                                       
Query: 301 cagagctagagaaagaattatcaactgaggaatacagaatggcacctgaagaaatgttca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cagagctagagaaagaattatcaactgaggaatacagaatggcacctgaagaaatgttca 560

                                                                       
Query: 361 acatccttagtcatcagggaaatgcaaattaaaacaactctgagattctacctcacacca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acatccttagtcatcagggaaatgcaaattaaaacaactctgagattctacctcacacca 620

                                                                       
Query: 421 gtgagaatggctaagatcaaggctccagccacatatgtagcagagaacgggcttgtggga 480
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 621 gtgagaatggctaagatcaaggctccagccacatatgtagcagagaacggccttgtggga 680

                                                                    
Query: 481 catcaatgagaggagaggcccttggtcctgtgaaggcttgatgccccagtgtagggg 537
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 catcaatgagaggagaggcccttggtcctgtgaaggcttgatgccccagtgtagggg 737


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 937
Length adjustment: 10
Effective length of query: 527
Effective length of database: 927
Effective search space:   488529
Effective search space used:   488529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)