BAC Information

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BAC

Clone NameMSMg01-160M04
Chromosome4 (Build37)
Map Location 123,354,447 - 123,354,754
singlet/doubletsinglet
Overlap geneMacf1
Upstream geneLOC633279, 9530002B09Rik, Ppt1, Cap1, Mfsd2, Mycl1, Trit1, Bmp8b, Oxct2b, Ppie, Hpcal4, Nt5c1a, Heyl, LOC194197, LOC622334, Pabpc4, Bmp8a, Oxct2a, D830031N03Rik
Downstream geneLOC100039110, Ndufs5, 6330407G11Rik, Rhbdl2, LOC667064, Mycbp, Rragc, 1700057H15Rik, LOC100039332, Pou3f1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-160M04.T7 (MSMg01no160_m04.b1)MSMg01-160M04.TJ (MSMg01no160_m04.g1)
ACCAG360342AG360343
length725784
length of high quality
(start - end)
313 (36 - 348)48 (58 - 105)
definitionCHROMAT_FILE: MSMg01no160_m04.b1 PHD_FILE: MSMg01no160_m04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:26:49 2005CHROMAT_FILE: MSMg01no160_m04.g1 PHD_FILE: MSMg01no160_m04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:26:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCCTG
GGAACCCATATTCCTGGGCAAGCAAGCTTTCTCATCCTGAGCATTTTGCA
GCTTTGTACCCAAGAAAGCTCATTCTCTTTCCAGCTTCTCTCGCTCCTTT
TTGACTGTGTGTTCTGAGTGCCTGGCTCTGTCCTGGAGCCTGGTTTCAAT
AGCGGGAGAGGCCTGGGAAAGTGGGGCAGAGTGAACGGTAGCTACACACC
ACCAGCTCAGCTGCAGTGCTTTGAAAGCAAATCTGGGTCACATTCACTGG
AGGGATAGAAAATGACCACGTGGGCAGAATTCCGTGCACGCGGCAAATTT
TTTTTTCCCCCCGTCCTCCCCCTGAGGCTCAGGGTCCCTTTGGGACTCCC
ACCCCCCCAAAAAGAAAAAGAATGCATTGCAGTGTACAATCCTGTCTTTA
CCAATGGCTTTCCACCATGCTTTCTGAGTGAGTTCCAGGTAATCCAGAGG
AATGGCAGTCTGGCATGTGGCTATCTGTTCTGAAGTTTAGGAATGAATAG
GATGGACTGGATGCTTTGGGGACTGTGGAAGGCTGTCATTTTTTAGAGAT
GATATGCTACTATAAGAAATGCAGAACTGCACTGTATTATAATCCTGAAC
TTCTCTTAACCTCTACTCTAGCACTATGCTCCCTCTTAAAGGTCTGTGAC
CCCACCTGTTTGTGACAATTAATTG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCAGGCCAGCCGGGCGTGGGGGCACACGCTGCCTTTAATCTCAG
CACTTGGGAGGCAGAGGCAGGCAAATTTCTGAGTTCAAGGCCAGCCTGGT
CTTCAGAGTGAGTCCCAGGACAGCCAGGACTGCACAGAGAAACCCTGCCT
GGGGGGGGGGGGGGGTTTCCCCTTCTAACCACCCTTTTTCCTCCCTTCCC
CAACCACCTTTTCTCCACATCCCCTCTTCCCACCCCAATTAATAACTTTT
TTTTTCTCTTTTTATCTCTTACTTTCACCCTTCTCTTTTTTTTTTCCCCC
CCCCCCCCCCCACATTATAATTTTAAAAAAGCCCACATTAAACCCCCCCC
CGGAAAAAAAAAAATAACCTCTACAGGTGTAGCTCCTCACCTCCCTTTAT
TTCATCCTCTCTCCACCCCCTTCCCCCCTTTTTCCCCTATTTTTACTTTC
CTCCCTTCCTCTCCTACCTCCTTCCATTTTTCTTTTTCCTCCTTTACTCT
TTTTTTCTTACACATTATTCAACATTATCTATATTCTCCTTATTCCCGCT
ACTTATCTTTCTTTTCACTTTTTCTACTTGCTTTTCCGCCATTACTCTCC
TCCCTTTTCTCCCCTCCTTCCTCGTTATATACTCCTATACCTATCTTTAA
ATCCCTTTTTCATTTTCACCTCCCTCCCTCTCTTTCTTCTCTTTCTCCTC
TATGTTTTTTGTTTACTTCGTCCCTCTCTTCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no160_m04.b1 MSMg01no160_m04.b1 CHROMAT_FILE:
MSMg01no160_m04.b1 PHD_FILE: MSMg01no160_m04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:26:49 2005
         (313 letters)



>mm_chr4_123354243_123354955
          Length = 713

 Score =  588 bits (304), Expect = e-172
 Identities = 307/308 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctcctgggaacccatattcctgggcaagcaagctttctcatcctgagcattttgc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 gaattctcctgggaacccatattcctgggcaagcaagctttctcatcctgagcattttgc 453

                                                                       
Query: 65  agctttgtacccaagaaagctcattctctttccagcttctctcgctcctttttgactgtg 124
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 452 agctttgtacccaagaaagctcattctctttccagcttctctctctcctttttgactgtg 393

                                                                       
Query: 125 tgttctgagtgcctggctctgtcctggagcctggtttcaatagcgggagaggcctgggaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 tgttctgagtgcctggctctgtcctggagcctggtttcaatagcgggagaggcctgggaa 333

                                                                       
Query: 185 agtggggcagagtgaacggtagctacacaccaccagctcagctgcagtgctttgaaagca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 agtggggcagagtgaacggtagctacacaccaccagctcagctgcagtgctttgaaagca 273

                                                                       
Query: 245 aatctgggtcacattcactggagggatagaaaatgaccacgtgggcagaattccgtgcac 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 aatctgggtcacattcactggagggatagaaaatgaccacgtgggcagaattccgtgcac 213

                   
Query: 305 gcggcaaa 312
           ||||||||
Sbjct: 212 gcggcaaa 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space:   214016
Effective search space used:   214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)