BAC Information

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BAC

Clone NameMSMg01-160O09
Chromosome4 (Build37)
Map Location 28,368,587 - 28,368,892
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040691, Tpm3-rs2, LOC100040842, LOC100040735, LOC230044
Downstream geneLOC665141, LOC100040773, Epha7, LOC100040907, LOC100040811
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-160O09.T7 (MSMg01no160_o09.b1)MSMg01-160O09.TJ (MSMg01no160_o09.g1)
ACCAG360444AG360445
length712717
length of high quality
(start - end)
314 (37 - 350)281 (77 - 357)
definitionCHROMAT_FILE: MSMg01no160_o09.b1 PHD_FILE: MSMg01no160_o09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:26:59 2005CHROMAT_FILE: MSMg01no160_o09.g1 PHD_FILE: MSMg01no160_o09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:26:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAGA
GTCATGACAGAACTTTTCTCTGTACAGAAAAGAAAAACCCAAAACAAAGA
TATGATTTCCTAACTAAAGTAGAATTTTCAATCAAAACGATGTTGAAAAA
TCACTGAAGATAAAAAAAAAAATCCATGGATCTTGGTGGATGGTTTGAGT
TTTTCCAAAGTTACCTGAAAATGCTGCTGCAGCTATGTCTCCAGCTTATC
AAATTTATCTGCTTTTACCTGTAGCCACCATAGATTTAATTTTCAATTTC
CCCACCCTCTCTCCTTTGCAAGGGGGTATGTTGGTATATGTTTTCATATT
TATTACTACCTCCCGCCCCCATTTTGCCAGGTGTTCCTTGTCACATCCTC
CAGCCCCCCTTCTCTAATTTGTGTGAAGCCTCTATATCTAGAATTTGTTT
TCCTTCTCAAAGACACACAAAATATTTTCTACTTGATTAAAAACTTTTTT
TCTCCAGCTACATTTCCAATGATAGATTATGCAGTCAGTCTTCAAAAATC
CCCCCACCCCTGCCCTGTTTAGTTTAAACTTTGGTAATCACTGACAATTG
AAACAGAATAATGAGACAAGACTAACAGATACTGTAAGTGCCAGTTATAT
AGCTTGCCACTTCACCTACAGCTCCCACAACACTGTAGGATAACCTCGTT
TTCTGTTAAGCT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAAAGACATGTCGAGTGCTTTATA
GGTTGAGATTCCAGTTGATCTTGTAATCTCATAAAGCCAGTCTTTATCCT
CCTCCTGGTCTACCTTCTGACTGTTCCTTATCCCATAGCTCCTCATCCAC
CTGTCTCTGAGAGGATATCCCCACTCCCCAACCTTCATCACACCAGACCT
CAAGTGTCTGTATTTTTTTTTAATTCAAGGTCCATTCTTCTACTCAGAAA
GGCTTGTCAGTTAACTATTTTAAATATGGAGCTATTGGTTCCCTAATATG
TTCATATTTTTCTTGCCCCACCCCCCGAAGATGTTCTGTCCTTGATTAAA
GGACTATTTGCGCCCCAACTCAAAACAGAGTTGCCTTCTGTTTCCGGCCT
TAGATCTCCAATAATTTGGATGAGCTACTCCATTGCTGACAGGAAATGCT
TGGCTGCTGGTGTTTGCTGCCAGGGTATAACAACCCTTTATGGGTCTCCA
GTAAATAAGCTATTACCTTACCGTGTCTTGTTGATTCTTTATTCCAACAC
CTTATTTTTAGCAGAACAACAATTTCTGAAGTGCTGATATCTTCTAGAAA
AGTACATAGGAATTCCTCGCCTACTATTATTGTTTAAACATCCATGTCTG
CTACTGTCAAGATACCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no160_o09.b1 MSMg01no160_o09.b1 CHROMAT_FILE:
MSMg01no160_o09.b1 PHD_FILE: MSMg01no160_o09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:26:59 2005
         (314 letters)



>mm_chr4_28368384_28369096
          Length = 713

 Score =  563 bits (291), Expect = e-165
 Identities = 303/307 (98%), Gaps = 1/307 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattccagagtcatgacagaacttttctctgtacagaaaagaaaaacccaaaacaaag 63
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 ggaaatccagagtcatgacagaacttttctctgtacagaaaagaaaaacccaaaacaaag 450

                                                                       
Query: 64  atatgatttcctaactaaagtagaattttcaatcaaaacgatgttgaaaaatcactgaag 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 atatgatttcctaactaaagtagaattttcaatcaaaacgatgttgaaaaatcactgaag 390

                                                                       
Query: 124 ataaaaaaaaaaatccatggatcttggtggatggtttgagtttttccaaagttacctgaa 183
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 at-aaaaaaaaaatccatggatcttggtggatggtttgagtttttccaaagttacctgaa 331

                                                                       
Query: 184 aatgctgctgcagctatgtctccagcttatcaaatttatctgcttttacctgtagccacc 243
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 330 aatgctgctgcagctatgtctccagcttatcaaatttatctgcttttacctgtacccacc 271

                                                                       
Query: 244 atagatttaattttcaatttccccaccctctctcctttgcaagggggtatgttggtatat 303
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 atcgatttaattttcaatttccccaccctctctcctttgcaagggggtatgttggtatat 211

                  
Query: 304 gttttca 310
           |||||||
Sbjct: 210 gttttca 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 713
Length adjustment: 9
Effective length of query: 305
Effective length of database: 704
Effective search space:   214720
Effective search space used:   214720
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)