BAC Information

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BAC

Clone NameMSMg01-161I13
Chromosome4 (Build37)
Map Location 115,995,001 - 115,995,407
singlet/doubletsinglet
Overlap geneMast2
Upstream geneCyp4a12, LOC546842, Cyp4a12b, LOC435802, LOC666393, LOC230641, Cyp4a14, Cyp4a10, LOC666168, LOC631037, LOC100040843, Cyp4b1, LOC546843, 4732418C07Rik, 4930544O15Rik, Atpaf1, Mobkl2c, Mknk1, Kncn, 6430628N08Rik, Dmbx1, Faah, Nsun4, Uqcrh, Lrrc41, Rad54l, 1520402A15Rik, Pomgnt1, Tspan1, 1700042G07Rik, LOC433748, Pik3r3
Downstream geneLOC631400, Ipp, Tmem69, Gpbp1l1, LOC622665, Nasp, Akr1a4, Prdx1, Mmachc, 0610037D15Rik, Tesk2, Toe1, Mutyh, Hpdl, LOC625336, LOC100041048, Zswim5, Urod, Hectd3, Eif2b3, Ptch2, 9530048O09Rik, LOC100041324, 4833401D15Rik, Plk3, Best4-ps, LOC625405, Rps8, Kif2c, Gm1661, Tmem53, 4931406I20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-161I13.T7 (MSMg01no161_i13.b1)MSMg01-161I13.TJ (MSMg01no161_i13.g1)
ACCAG360913AG360914
length1,1641,269
length of high quality
(start - end)
422 (29 - 450)142 (144 - 285)
definitionCHROMAT_FILE: MSMg01no161_i13.b1 PHD_FILE: MSMg01no161_i13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:28:15 2005CHROMAT_FILE: MSMg01no161_i13.g1 PHD_FILE: MSMg01no161_i13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:28:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNGGCAGTGCGCGCTATAGACTCCTATAGGGAGAGGATCCGCGGAATTC
ATGATACTTAGGTGAGATGAAGAGCAACAGGAACTTGTAAGGAAGGTCAA
CCCCAAAAAAATGGTGTAACAAAGGCATGAAATATGGCTAGGCAGAGACC
AGCAAACCTTGTATGCCTGCAGAACCAAAAATCCCACAGTATAGGATATG
GCAAGAAACAGGCAAAAAGGTGATGGGGGCCTTGAGTCTGGTCCTGGGAC
TGTCTGCCTTCAGTCATTCGACTTCCCGGCGTCACATAGGCACACAGAGA
GCCCATCCTTCAGAATTCGCTGCAGCTAAGCTGGGACTGAAAGGGAATTC
TTTTCTTTTCTTTTCCTCCCAGGCCACTGCACAGATGGAAGAGCGACTAG
CTGATTTCATTTCCTCTAACACTCCAGATAGTGTGTTGCCCTTGGCAGAT
GTTTTTTTTCCCCCCCCCCTCATCAGGTGATTGAGATGAAAAAAAAGTGG
CTGGATAAATCTCGGAGTGGCCTCATTACGTCACACTATTTCTATGAACT
TCAAGAGAATTTGGAAAAGCTTCTGCAAGATGTAAGTGTCTTGACGAGGA
ATGTAATGACACTTCCACAAGGTCATCTCGGGAATTGGCAGTGAGCTCAC
TCTTCCAGCTGCTGGCCACAATCAGGTCTCCTTGCCAGTGAATAGGAGTT
TCCATGTTTGGTACTGATGATCTGATGTTCTTCCCACGGCCTTTCCATCA
CTAAGAGAAGCCTGCTTGGTTTCAGAGGAACTCAGTTTTTGTGAATGGTT
CTCTAAAGCCAAAGCTGTATTAATCTGTCTGAGACTCCACCATGGGTAGT
GTATAATTCCCGCATTGTGTTTATGTTTGAGAATTTTTCTTTTTTTCCAA
AAATGCTTAGGGATTTTACTTTTTATCTCAAACAAAAAATGTTTTAAGAT
TTTTTAATATGTTGGCTCCATCCTTCTTCTCTATTTTTTTTGGGGGGGTA
TAATTCCTTTTATTGATTTTGTCTTTATTTTTATATCTATCTCCCCTGTC
TCTTTTTTTTTATATTTTATTTTTTTTTTTAATTTTTCTTCTCCTCCAAT
CTTTTTTCTATTATAATTTATTTATTTGTCTTCATTTTCCCTACTATTTT
CTCTTTATACTAAC
NNNCAAGAAGGTAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTGTCCTTTTACTTTGAATCCAGCTTTGAA
CACATTTTGATTTTGACTGTTTCCTGGCCCTGTCTCAATTCAGAACACCC
ACACACACACACACACACACACACACACACACACACACACACACACACAC
ACACACCCTCCCCCCCAACCCCCCCCCCCCTTTTTTGTTTTTTTCCAAAA
AGAATTTCCTTGTGAAAACCTGGCTACCTTGAAACTAACTCTGAAAACAA
GGCTGGCCTCAAACTTAGTTTTTGAACTCAAAAAATCTGCTTGCCTCTCT
CTCAAAAGGGCTGGGTCTAAAGAAATGAGCCACCGTGACTGGCTTAACTC
ATATTTCTTTTAAAAAAAGGTAAAACCCACTTGGGCAGGGGGGGCGCATG
TTTTTTTTTCCCCCCCCCCCAAGGAAAAAANAGGGGAAAAAAAAAAAAGG
AGGTTTGTTTGGTTTATAGGGTGAGTTNTAGAATAGTAAGGGTTATAAAA
AAAAATTTGGTTTNAANAAAATAAAGTAAAATAAAATATAAATAAAAATA
AATAATTAAAAAAAATAAAATAAGAAAGGTAAAATTTTTTAGAAGGTAAA
GGATTAAAATTGAATAATTTTTTAAAAGTTAGTTAAAAAATAAAGTTATT
GAGAAAAGTTTTTGTTAAAGTTAAAATAAGGTTGTTAAATTAAATAATAA
TGGTTTTTGTTATTNAATTGAAAAAAGAAAAAATGTGTTTTGGATTATAA
AAATGTATTGAATGTAAGAATGTAATTTTTTAGGAAAGTTTAAATATTTT
ATGTTTTTTAATTAATTTATTTATTTTTTTTTAAAATTTATTAAATGTTT
AAGAATTTTTTTTAAAATAAAGTTTAAAAATTTTTAATTTTAATAGAATA
AATTTTTTATTTAATATAATTTAAAAAAATAAATTTTTTTTTTTTATTAA
AAAATAAATAAAATATAAATATTATTAAATAAAATATTATTTTTAATATT
TAAAATTATTAAATTTATTTTATATTATTTATTTTTTTAATATAGATAAA
AATATTAATTTTTTTTATTTATTATTAATATATTTATAATTATATTAGTA
ATTATTTATAATATTATTTTAATAATATAGTAATTATTATAATATAATTA
ATTATAGTTTNATTAATATTTATTTAATATATGTATGATATATNTGTATT
TATATTAANTATATATAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no161_i13.b1 MSMg01no161_i13.b1 CHROMAT_FILE:
MSMg01no161_i13.b1 PHD_FILE: MSMg01no161_i13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:28:15 2005
         (422 letters)



>mm_chr4_115994786_115995607
          Length = 822

 Score =  764 bits (395), Expect = 0.0
 Identities = 404/407 (99%)
 Strand = Plus / Minus

                                                                       
Query: 16  ggaattcatgatacttaggtgagatgaagagcaacaggaacttgtaaggaaggtcaaccc 75
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 ggaattcatgatacttaggtgagatgaagagcaacaggaacttgtaaggaaggtcaaccc 563

                                                                       
Query: 76  caaaaaaatggtgtaacaaaggcatgaaatatggctaggcagagaccagcaaaccttgta 135
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 caaaaaaatggtgtaacaaaggcatgaaatatggctaggcagagaccagcaaaccttgta 503

                                                                       
Query: 136 tgcctgcagaaccaaaaatcccacagtataggatatggcaagaaacaggcaaaaaggtga 195
           ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||
Sbjct: 502 tgcctgcagaaccaaaaatcgtacagtataggatatggcaagaaacaggcaaaaaggtga 443

                                                                       
Query: 196 tgggggccttgagtctggtcctgggactgtctgccttcagtcattcgacttcccggcgtc 255
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 tgggggccttgagtctggtcctgggactgtctgccttcagtcattcgacttcccggcgtc 383

                                                                       
Query: 256 acataggcacacagagagcccatccttcagaattcgctgcagctaagctgggactgaaag 315
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 acataggcacacagagagcccatccttcagaattcgctgcagctaagctgggactgaaag 323

                                                                       
Query: 316 ggaattcttttcttttcttttcctcccaggccactgcacagatggaagagcgactagctg 375
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ggaattcttttcttttcttttcctcccaggccactgcacagatggaagagcgactagctg 263

                                                          
Query: 376 atttcatttcctctaacactccagatagtgtgttgcccttggcagat 422
           | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 acttcatttcctctaacactccagatagtgtgttgcccttggcagat 216


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 422
Length of database: 822
Length adjustment: 9
Effective length of query: 413
Effective length of database: 813
Effective search space:   335769
Effective search space used:   335769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)