Query= MSMg01no161_j06.b1 MSMg01no161_j06.b1 CHROMAT_FILE:
MSMg01no161_j06.b1 PHD_FILE: MSMg01no161_j06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:28:20 2005
(262 letters)
>mm_chr4_120355304_120355967
Length = 664
Score = 484 bits (250), Expect = e-141
Identities = 260/264 (98%), Gaps = 2/264 (0%)
Strand = Plus / Minus
Query: 1 ttacatactgtttttatgagagttgtcatggtgtctcttcacagcaatagaaacccgatg 60
||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct: 520 ttacatactgtttttatgagagttgccatggtgtctcttcacagcgatagaaacccgatg 461
Query: 61 acacctctctttcatggtctgagactccctcggctcctctcctggtactaggacctctct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 acacctctctttcatggtctgagactccctcggctcctctcctggtactaggacctctct 401
Query: 121 gctttctcaggtgtgatgttagcgagatggaggacaagaaacatctattttgttttaaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 gctttctcaggtgtgatgttagcgagatggaggacaagaaacatctattttgttttaaag 341
Query: 181 ttgttgtaacatttgtccat--tgtgtgttgggggcagacacgtggaagtcagcagataa 238
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 340 ttgttgtaacatttgtccatcatgtgtgttgggggcagacacgtggaagtcagcagataa 281
Query: 239 tttgcaggtggttctctcttttca 262
||||||||||||||||||||||||
Sbjct: 280 tttgcaggtggttctctcttttca 257
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 262
Length of database: 664
Length adjustment: 9
Effective length of query: 253
Effective length of database: 655
Effective search space: 165715
Effective search space used: 165715
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no161_j06.g1 MSMg01no161_j06.g1 CHROMAT_FILE:
MSMg01no161_j06.g1 PHD_FILE: MSMg01no161_j06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:28:20 2005
(379 letters)
>mm_chr4_120227201_120227979
Length = 779
Score = 702 bits (363), Expect = 0.0
Identities = 375/379 (98%)
Strand = Plus / Plus
Query: 1 aatggcagcctgatctacagagtgagatacaggatagccagggctacacagaaaccctat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatggcagcctgatctacagagtgagatacaggatagccagggctacacagaaaccctat 260
Query: 61 cccaaaaagcataaataaattttaaaataaataaataaatgctattaaaattcaggatat 120
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctcaaaaagcataaataaattttaaaataaataaataaatgctattaaaattcaggatat 320
Query: 121 aaacttatggaaatactatctttaaaaacagtctatctttctgtacaatgagtatttgct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaacttatggaaatactatctttaaaaacagtctatctttctgtacaatgagtatttgct 380
Query: 181 agtaataagagtaacaatgaaacgtgccacacagtgtattaaaaaggatcatctctgtgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agtaataagagtaacaatgaaacgtgccacacagtgtattaaaaaggatcatctctgtgg 440
Query: 241 acacaaacaattacaagtcagaaaactacaattcagaacatgttcataataaaaattcta 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcacaaacaattacaagtcagaaaactacaattcagaacatgttcataataaaaattcta 500
Query: 301 ggtaaattatgattagggaaattctgaaaatgtataacagcctcagcctgacacttgcta 360
|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct: 501 ggtaaattatgattagggaaattctgaaaatggaaaacagcctcagcctgacacttgcta 560
Query: 361 cctgcttactgtcaagtct 379
|||||||||||||||||||
Sbjct: 561 cctgcttactgtcaagtct 579
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 379
Length of database: 779
Length adjustment: 9
Effective length of query: 370
Effective length of database: 770
Effective search space: 284900
Effective search space used: 284900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
