BAC Information

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BAC

Clone NameMSMg01-162C24
Chromosome4 (Build37)
Map Location 33,169,425 - 33,169,712
singlet/doubletsinglet
Overlap geneGabrr2
Upstream geneLOC665228, LOC665232, Bach2, Gja10, Casp8ap2, Mdn1, Lyrm2, Ankrd6, LOC665298, Rragd, 4933421O10Rik, Ube2j1, LOC100039142
Downstream geneGabrr1, Acy1l2, Srrp, Pnrc1, Rngtt, LOC100041919, LOC100041924, Cnr1, Spaca1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-162C24.T7 (MSMg01no162_c24.b1)MSMg01-162C24.TJ (MSMg01no162_c24.g1)
ACCAG361388AG361389
length711701
length of high quality
(start - end)
318 (44 - 361)289 (71 - 359)
definitionCHROMAT_FILE: MSMg01no162_c24.b1 PHD_FILE: MSMg01no162_c24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:29:30 2005CHROMAT_FILE: MSMg01no162_c24.g1 PHD_FILE: MSMg01no162_c24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:29:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTATAGGATCATCATTAAGAATTAAGAATTCATCTATTTGTCTACAT
AGCATCACTAAGAGACAGTACATCTTCGTAGTTCTGCAGAGATGTGTTCA
AAAGGGTGGGCTAATACCTAGTGATTGTTATGTGTGTTTAATAACAGGAA
AAGCATATTAATAGCAGGAATCTTTCCTAAAATGGTTTTCTCCTGGGCCT
TGCTTATGAGAGCAAGCCTGTCATGAATTATTTATTAATCCAAAGCAGTC
TCATCTCAGGAAGTTATTAGCTTGTTCTATGATGGCTCCTGACAGATGTT
ATATTCTCGTATGTATATGTGCCCCCCCGCACGTGCTATATATACTAGCA
TGCTGTATATAGTATTTACCCGCGGTAGGTGTAACATATGTATGTGCTAC
ATGGTATATTAGTGTGTTGTATGTGGTGTATTTGCGTTATACTTGCTGTG
GTATTTGCATGTTAGGTGTGGTGTATTAGTGTGTTGTATGTGTCCTTTCC
TTTTGCCCTATTCTCTTTATCCCTGTTGTAATATCACTTGTTTTTATTTT
TATTTTTTTATTACTCTTTTTTATATTCCTCTTTACTTTATCCTTTTTTT
CTCCCCCCCCATATTTTATTCTTCCCCTATTTTGATATTTATCTTTCTCT
ATACTTAACCC
TACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAAATGTGTCTCTCCCACATTTGAGTCTGGG
CATGACAGTCATTAGCTACCAGTGCTGCTGTAGAAGGCCAGTCTGGAAGT
CGTGTGAAACTTCTGGATCAGAAACTGGGACAAGGAGATCTTCTCGTCTG
TCTTCAGGGACTCGTCCCCGTTCTTCCAGTACAGCATCAGATCTTCATCT
GTGTACGCATCTTTGGGAGAGGAAAACAAGGGAGCTTTGACCCTGACTTC
TCTGGTTGTGAGAAGCATCTAGGAAGCCCTGTGCCAGAGGGAGCAGTTCT
TAACACTGTTGTATACCCCCCACCCCCACGGTTCTCAAGTGGCCCCAAGG
TTGGAGAGCAATAGCCCAAAAAGGCATAAAAGCCTTGAATACTTACAGCT
CTCCAGCTCCAAAGAGCAGGTCTGGGAATCCAGGGGAAAGTGGCTGAAGT
CCATGTTGCACATGGCAGTGACCGTAATCCTGGAAAACACAAAGACGTGA
GCTGGTTTGCGAGTGGACCATCAGATCAGGCTCTGCTCACACCTAGAAAG
ACCCAGTATGTCACCCACGGTGGTGGCAGCCTCGATCTGTCACCCTAAGA
GGTCAGGCATCTAAACCATGGAAACTTAGTTGGAACATTGTCTTCTGGAC
C
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no162_c24.g1 MSMg01no162_c24.g1 CHROMAT_FILE:
MSMg01no162_c24.g1 PHD_FILE: MSMg01no162_c24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:29:30 2005
         (289 letters)



>mm_chr4_33169225_33169913
          Length = 689

 Score =  534 bits (276), Expect = e-156
 Identities = 285/288 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaatgtgtctctcccacatttgagtctgggcatgacagtcattagctaccagtgctgctg 60
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 488 aaatgtgtctctcccacatttgagtctgggcgtgacagtcattagctaccagtgctgctg 429

                                                                       
Query: 61  tagaaggccagtctggaagtcgtgtgaaacttctggatcagaaactgggacaaggagatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tagaaggccagtctggaagtcgtgtgaaacttctggatcagaaactgggacaaggagatc 369

                                                                       
Query: 121 ttctcgtctgtcttcagggactcgtccccgttcttccagtacagcatcagatcttcatct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ttctcgtctgtcttcagggactcgtccccgttcttccagtacagcatcagatcttcatct 309

                                                                       
Query: 181 gtgtacgcatctttgggagaggaaaacaagggagctttgaccctgacttctctggttgtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gtgtacgcatctttgggagaggaaaacaagggagctttgaccctgacttctctggttgtg 249

                                                           
Query: 241 agaagcatctaggaagccctgtgccagagggagcagttcttaacactg 288
           ||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct: 248 agaagcaacaaggaagccctgtgccagagggagcagttcttaacactg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)