BAC Information

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BAC

Clone NameMSMg01-162J06
Chromosome4 (Build37)
Map Location 54,367,114 - 54,367,403
singlet/doubletsinglet
Overlap genenone
Upstream geneSlc44a1, Fsd1l, LOC666483, Fcmd, Tal2, LOC435784, Tmem38b, LOC670124, LOC100041280
Downstream geneLOC666901, LOC100041303, LOC384018, EG666920, Zfp462, LOC670211, Rad23b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-162J06.T7 (MSMg01no162_j06.b1)MSMg01-162J06.TJ (MSMg01no162_j06.g1)
ACCAG361662AG361663
length721715
length of high quality
(start - end)
---290 (73 - 362)
definitionCHROMAT_FILE: MSMg01no162_j06.b1 PHD_FILE: MSMg01no162_j06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:29:59 2005CHROMAT_FILE: MSMg01no162_j06.g1 PHD_FILE: MSMg01no162_j06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:29:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTAATTAGAGATATCTGTAATCATTGTACTCACCTTTTTAGACCAT
TATTCTCACATCCTTTAAACACGAAGAGGAGAAAGAAGAAGGAGGAGGAG
GAGGAGGAGGAGGAGCAGCCTGTTCTACTAAGTGAGTGCCAGGACAGCCA
GGGCTACACAGAGAACCCCTGTCTTGAAAACAAAACAACCACACCAAAAA
AAATCCATTGAAATCTAAATTATAGTTCCATCCACCCTGTAATACACACC
TGCTTTAGGTGTCCCCTTCCTATTTTTTATGGCTTACATCCCAATGATGA
GGACCAGGGTTTTTTTCTTTTCCCGTGGCAGGGTCACNANACAGAACAGN
CAGGGTTACTTGGTACTGCCCCCCTTGAAAAAAAGCCCCTTCTATGTGAG
TTGGGCTGTCCCCAGGATTTCCGCAGTCCAGATATGCTCGGTCCCATCTC
TAGATAGATGGAGATAGGTGGTTCCTTCGGCCATTGTGACTCTCATTTAT
TCTTCTCGTCTGATCTATTTTGTGCCTTGCCTGTGTGCCCTGTCACCGCC
ACTGCTTCTTCTATCCTTACTTGCGTGTCACAGTCTTTGGAACTTTTGAG
GGTTCTTCCCCTTCCTCTTCCGGACACTCCTCCCGTGCTTGTTGTGCTGC
CTCCTTCTGATCTGTTTTGAC
AATACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXATTGCTTTGTGGCACCATCTGTCTCATT
CCCTGATTTACATAATAGGGAACCCTGCTCTGACTGCAGCAAATGAAAAG
CGACAAAGGAATGGCAAGCAAAGATGAAATGTGTACATGGGCAGTACATC
AAATTATGTGTAATATGGTCAAATCCCTCCAATTAAAAAAAAAAAAGTAA
GGATCTCAAAATCCAGCCTAGTTTCTACCTCAGCCTCTTTTCTGCTCTCA
AACCCCCTCTGTCCTTCTGCTGTATCTGCAGCCCTCACAAACGTGCCTTG
TTTTGCTCCAAGATTTCATTTGCCACCCCCCATTTTATTAAATATTTTAT
TTTCCTCTTGGGGACCCATTAGAACATCAGTTTGAGAAAGTGACATAAAT
CAGCCGTGTTTAGTATTCACGGAGGATGCTGCAAAAATAAGCAGGTTCAT
ATTAACCTGAAATTTAAAATGGGGTAAAAAAAATGTCCCCTGGAAGAGCT
TTTGTGAATCCTTCCTGTTTCCTTCCTGTCCCTCTCCTGGGAAGGTTCTC
ATAAAGGGAGCTGGAATGAAGGCTCTGCTCCGAGAAAGACAAAGGACTGA
TTTTTCAAACTGCACCAGTCACTTTAATCTCATGATGTGTCTTTCATCCA
GGCGCTAAGGCAAGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no162_j06.g1 MSMg01no162_j06.g1 CHROMAT_FILE:
MSMg01no162_j06.g1 PHD_FILE: MSMg01no162_j06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:29:59 2005
         (290 letters)



>mm_chr4_54366914_54367603
          Length = 690

 Score =  538 bits (278), Expect = e-157
 Identities = 287/290 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   attgctttgtggcaccatctgtctcattccctgatttacataatagggaaccctgctctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 attgctttgtggcaccatctgtctcattccctgatttacataatagggaaccctgctctg 431

                                                                       
Query: 61  actgcagcaaatgaaaagcgacaaaggaatggcaagcaaagatgaaatgtgtacatgggc 120
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 actgcagcaaatgagaagcgacaaaggaatggcaagcaaagatgaaatgtgtacatgggc 371

                                                                       
Query: 121 agtacatcaaattatgtgtaatatggtcaaatccctccaattaaaaaaaaaaaagtaagg 180
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 agtacatcagattatgtgtaatatggtcaaatccctccaattaaaaaaaaaaaagtaagg 311

                                                                       
Query: 181 atctcaaaatccagcctagtttctacctcagcctcttttctgctctcaaaccccctctgt 240
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 310 atctcaaaatccagcctagtttctacctcagcctcttttctgctctcagaccccctctgt 251

                                                             
Query: 241 ccttctgctgtatctgcagccctcacaaacgtgccttgttttgctccaag 290
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 ccttctgctgtatctgcagccctcacaaacgtgccttgttttgctccaag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)