BAC Information

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BAC

Clone NameMSMg01-162K11
Chromosome4 (Build37)
Map Location 19,181,287 - 19,181,600
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667251, LOC435772
Downstream geneCngb3, LOC623122, Cpne3, LOC100040306, 2410005O16Rik, Wwp1, Slc7a13, Atp6v0d2, LOC667282, Ttpa, LOC667301, EG664800, E130310K16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-162K11.T7 (MSMg01no162_k11.b1)MSMg01-162K11.TJ (MSMg01no162_k11.g1)
ACCAG361716AG361717
length689696
length of high quality
(start - end)
135 (426 - 560)315 (382 - 696)
definitionCHROMAT_FILE: MSMg01no162_k11.b1 PHD_FILE: MSMg01no162_k11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:30:04 2005CHROMAT_FILE: MSMg01no162_k11.g1 PHD_FILE: MSMg01no162_k11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:30:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTCXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGGGACCGAACGGNGGA
ANNNNTGTTACTNCAGGNGGGGGNNANAAANAANANAANGNAAACCAGNA
GNCAACANCTTTTTAACAAAGAAAGAACGGGAAGNAAGGNCACGGAAANC
AGAGACNAGANAAGCCGGCCCACGNNCNCCCGACCNANGCAANANAGCAC
CCGAAGCCCCAGACAGAGCAACNCGACAACAAAAGGACATATTTTTTATA
CAAATTGGAAAGGAAGAAGTCAAAATATCACTACTTGCAGATGATATGAN
GGNATATTTTTTTTTTTTCAAAAAACNCCAACAGAGAACNCCGAAACCGG
ATTTTTTTCTCCCCCCCCCCACCTGGATATAAAATTAACTCAAACAAATC
AATGCCTTTTCTCTACACAAAGGATCAACGGGCTGAGAAAGAAATTAGAG
AAACAACACCCTTCAGAATAGTCACAAATATTATAAAATACCTTGGTCTG
ACTCTAACTAAGGAAGTGGTAGATCTGTATGATAAGAACTTCAAGTTTCA
TGAAGAAAGAAATTGAATAAGATCTCAGAAAATGGAAAGATCTCCCATGC
TCATTGATTTGCAGAATTAATACAGACAATTTGTTTTTTTTGTCGAAAGC
AATCTACAGATTCAATGCAATCTCCATCAAAATTCCCGG
ACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCATTTCAAGCCAAGTATCCAGA
TGTTATAGTGGTACTGGTCAGCAAGTTTACACTTGAGAGCCATGGCTTTT
ATTCAGAGGAGCATCAAACCAATGTAAAGAATAAAGGACTTATGACAGTT
CTTATTAAAAGCACCTTGCAGTTGCCCTTATGAGCCTCAAACTATGCTGT
TTTCATTTAATTAATAAAAAGTCAGTATGAAGGGTCTAAGTAAAATGAAC
GGGCCCAGGACAATACCTGTATGTGTGCTTTCTGAAGGCTGCACTGATAA
ATGACTTTTGTATATTCCCCCCTCCCCCCCTAGATTCCTGAATCTTACTT
ATTACAGCACAATAGCCACAAACAAAAAGACAAACCCAACCCCAATTCCA
GTTCACCATCCCTAGGCCTCATTGATAGAACAGAAAAAAATAATAGTGCC
TTCTTCCTCCAGTCAGTAGATCAACTCCAGCATATGGAACAGGCCAAGTA
AACATTTGCTATAAATAAGTATTAGCATCTCTTCTGTATAGCCCCCAAGA
GGCCTCTCCAATATTGTGCAAGACTTCCACCTCTGTCAAAGTGTCTTCTA
TTGACTGCAAATTGCCTCAGAGCTGTATATCATTAACAGGACTGTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no162_k11.g1 MSMg01no162_k11.g1 CHROMAT_FILE:
MSMg01no162_k11.g1 PHD_FILE: MSMg01no162_k11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:30:04 2005
         (315 letters)



>mm_chr4_19181087_19181801
          Length = 715

 Score =  547 bits (283), Expect = e-160
 Identities = 307/315 (97%), Gaps = 2/315 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agattcctgaatcttacttattacagcacaatagccacaaacaaaaagacaaacccaacc 60
           ||||||||||| ||||||||||||||||||||||  | ||||| ||||||||||||||||
Sbjct: 201 agattcctgaaccttacttattacagcacaatagttagaaacagaaagacaaacccaacc 260

                                                                       
Query: 61  ccaattccagttcaccatccctaggcctcattgatagaacagaaaaaaataatagtgcct 120
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccaatgccagttcaccatccctaggcctcattgatagaacagaaaaaaataatagtgcct 320

                                                                       
Query: 121 tcttcctccagtcagtagatcaactccagcatatggaacaggccaagtaaacatttgcta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcttcctccagtcagtagatcaactccagcatatggaacaggccaagtaaacatttgcta 380

                                                                       
Query: 181 taaataagtattagcatctcttctgtatagcccccaagaggcctctccaatattgtgcaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taaataagtattagcatctcttctgtatagcccccaagaggcctctccaatattgtgcaa 440

                                                                       
Query: 241 gacttccacctctgtcaaagtgtcttctattgactgcaaattgcctcagagctg-tatat 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct: 441 gacttccacctctgtcaaagtgtcttctattgactgcaaattgcctcagag-tggtatat 499

                          
Query: 300 cattaacaggactgt 314
           |||||||||||||||
Sbjct: 500 cattaacaggactgt 514


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)