BAC Information

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BAC

Clone NameMSMg01-162L12
Chromosome4 (Build37)
Map Location 75,181,572 - 75,181,686
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039814, LOC636847, 3110001D03Rik, LOC623529, LOC100039833
Downstream geneLOC100039884, LOC667845, Ptprd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-162L12.T7 (MSMg01no162_l12.b1)MSMg01-162L12.TJ (MSMg01no162_l12.g1)
ACCAG361756AG361757
length728707
length of high quality
(start - end)
---114 (78 - 191)
definitionCHROMAT_FILE: MSMg01no162_l12.b1 PHD_FILE: MSMg01no162_l12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:30:09 2005CHROMAT_FILE: MSMg01no162_l12.g1 PHD_FILE: MSMg01no162_l12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:30:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCTTTTGCCAATCATAAGAGACTCTAGAGGTTAAACCTTAGATC
GCACCTGCATGCACGCAGCGTGATGGCGGCGAAGCGTCCACAATGGCTGA
CTCTACCCATGCTTTTTAGAAGTTCTAAGACTTGAAAGATTCATGGATCT
GAAAAGGTCATAAATAGCTGTCATATTGAAACTTGCAGAGAGAATTAATC
AAGAGAAGAATTCCTGGACCACGGTAACCCAAATATGGCTCTAGAATAAA
CGATATATCACCCTTTTGTTTATGAGTTAGTCCATGTAGACGCATATATT
AAATCATATTTTTTTTTTACCCCCCCCCCACCCCCGTCAAGGTTACATAG
AGAGATGCTGTCCTATACCCCCCACATAAAAAATGATGCTGGGGGGGGCG
GTCAGTTGTTAAAACCTTAGATTGCTCTCCTATAAATTTGTCTGGTTTTC
TCAAAAATCGTTGTTTTTTCCCGATTTATCCAACTAGTGGTCTTACTTCC
TTTTGCGCTATTTTCCTTCACACCACCCTCCCCAGTTTTACGCCTGTCGT
TTTATTCCCTTTATTTCCCCGTGTTATATTAATTATTTCCTTTTTTTATT
CCTCCCCCCTAACCTACGCCCTTTATCCTTCGCCTTTTAAAACATGCAGG
CTACCATTTTCCGATGGCAATTCTTTTN
TTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGGCCTTGAGCTCACTAAACC
TTGCAAGGTCTTCTGTCCGGTGGCACAGGCCACTTGCCCTACATATGAAA
AGCATTAATTGTACTTATGTATTATTTTTAAAAACAGACATGAGTTGTAA
GAGGCTTTGGCTGAGATGGAAGGAGGTTCTGGGAAAAATTAGCATGACTG
CTGAACAATAAAATTTAAAATGTATTTTTAAAAAGAAAAACATGTTCAAT
TATTAAGCATGAGAATGCTATGGTAGAAATCACTCTAGTCTGGGGTATAA
CCATTTCTAGATTATTTTATAGATCGCCCCCCACGAAAACACAAGAATGG
AAACAATCAAAGCTATGTATGGACACGGATGAGAACAAACTGAAGCACAG
TACTCTCTGTGTCAAACTCAAAAGTGTTGCAATTTTGTTATAGGATATTT
AAGTATTTCCTTAAATTAAAAGGGTATAAAATTGTGAATAGTGCTTTATT
TTACCTCAAGTATGCATAGAAAATGAGTTTTACTGTGGGATTTTCATATG
TGCATCATTGTGTCTTCTCATATTTGTCCTCTCATTTTTCCTGCCCCTTC
TCCCCTGCTTTCTTTTGTTACTCTTCACAAATTTTCATTTTCTCCCCATG
TTGCACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no162_l12.g1 MSMg01no162_l12.g1 CHROMAT_FILE:
MSMg01no162_l12.g1 PHD_FILE: MSMg01no162_l12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:30:09 2005
         (114 letters)



>mm_chr4_75181372_75181886
          Length = 515

 Score =  207 bits (107), Expect = 2e-58
 Identities = 113/115 (98%), Gaps = 1/115 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagggccttgagctcactaaaccttgcaaggtcttctgtccggtggcacaggccacttgc 60
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caggggcttgagctcactaaaccttgcaaggtcttctgtccggtggcacaggccacttgc 260

                                                                  
Query: 61  cctacatatgaaaagcattaattgtacttatgtattatttttaaaaa-cagacat 114
           ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 261 cctacatatgaaaagcattaattgtacttatgtattatttttaaaaaacagacat 315


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 114
Length of database: 515
Length adjustment: 8
Effective length of query: 106
Effective length of database: 507
Effective search space:    53742
Effective search space used:    53742
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)