BAC Information

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BAC

Clone NameMSMg01-162O12
Chromosome4 (Build37)
Map Location 85,411,066 - 85,411,342
singlet/doubletsinglet
Overlap geneA930009N24
Upstream geneD530005L17Rik, LOC622811, LOC100040303, Sh3gl2
Downstream geneLOC668052, Adamtsl1, 4930500O09Rik, Rraga, 6230416J20Rik, LOC100040388, Adfp, EG624685, Dennd4c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-162O12.T7 (MSMg01no162_o12.b1)MSMg01-162O12.TJ (MSMg01no162_o12.g1)
ACCAG361882AG361883
length698702
length of high quality
(start - end)
310 (46 - 355)280 (75 - 354)
definitionCHROMAT_FILE: MSMg01no162_o12.b1 PHD_FILE: MSMg01no162_o12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:30:23 2005CHROMAT_FILE: MSMg01no162_o12.g1 PHD_FILE: MSMg01no162_o12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:30:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTT
TCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCC
TATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTT
TTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGTAGTTTCAT
TAGGTCCCATTTGTCCATTCTCGATCTTACTGCACAAGCCATTGCTGTTC
TGTTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCACT
TTTTTTTTTATAACCTCCCCCCCCTCTGGTTTTGTGTGAAGTTCCTTGAT
CCACTTAGATTTGACCTTAGTACAAGGAGATAAGTATGGATCGATTCGCA
TTCTTCTACACGATAACAACCAGTTGTGCCAGCACCATTTGTTGAAAATG
CTGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTG
ACCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAACTCTATTCCATTGGT
CTACTTGTCTGTCTCTATACCAGTACCATGCAGTTTTTATCACAATTGCT
CTGTAGTAAAGCTTTAGGTCTGGCATGCTGATTCCGCCAGAAGTTCCG
ATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTTCGCTAAACACTTTAAAGGAAACA
AACAGAGCCCAAACCAAAATGCAAAGCAAAAACAAAAATATCCTACCAGA
AAAAAAAAAGAGCAAATTTCATATAATGAATGTAACTAATACTTTGAAGT
AGAAGTATCTGCAATGATGCCAGAGAAGGATGGTGGAATTCTCATCAGGC
TATAAAACCATCTCCTTTTTCTTTACTCATTTAAGTTATTACTGTTGCAT
GTTCAGACTCGCTGGCAAAACATCAGATATTTTCGAAAGTGAATCCTCCA
CATGTTTCTTCAAACACACCTCACCACTCAAGTAAAGTGTTTAAAACGTG
CCAGACGCCGGAAGCGACCGAAAGTTACCCGCCCCACCCCCACCCCCATG
GAGGCTGCGTGCTGCCTTGTGGTTTGCTGCCTCTTCTTCCCGGGCATGCA
GCAGATGCTGCTCTATGGCTTGCCTTCATGTTTGCTAGAAACAATCACCA
TGGGTCAGAATCAGCCACGGAATGGCTGTGTTTCCATGCATAAAGTAGAA
GAGACACTGTACCGGGTCTTCAGTTTTGTGACTATTCAAGAAGTCAGACA
GGAACTCTTCATGAAGGCTCTCTCTTCGAATCAGTGTAAATTCCCTCAGG
AA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no162_o12.g1 MSMg01no162_o12.g1 CHROMAT_FILE:
MSMg01no162_o12.g1 PHD_FILE: MSMg01no162_o12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:30:23 2005
         (280 letters)



>mm_chr4_85410866_85411542
          Length = 677

 Score =  509 bits (263), Expect = e-148
 Identities = 275/281 (97%), Gaps = 5/281 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttcgctaaacactttaaaggaaacaaacagagcccaaaccaaaatgcaaagcaaaaaca 60
           |||||||||||||||||||||    ||||||||||||||||||||| |||||||||||||
Sbjct: 477 tttcgctaaacactttaaagg----aaacagagcccaaaccaaaatacaaagcaaaaaca 422

                                                                       
Query: 61  aaaatatcctaccag-aaaaaaaaaagagcaaatttcatataatgaatgtaactaatact 119
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 aaaatatcctaccagaaaaaaaaaaagagcaaatttcatataatgaatgtaactaatact 362

                                                                       
Query: 120 ttgaagtagaagtatctgcaatgatgccagagaaggatggtggaattctcatcaggctat 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ttgaagtagaagtatctgcaatgatgccagagaaggatggtggaattctcatcaggctat 302

                                                                       
Query: 180 aaaaccatctcctttttctttactcatttaagttattactgttgcatgttcagactcgct 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 aaaaccatctcctttttctttactcatttaagttattactgttgcatgttcagactcgct 242

                                                    
Query: 240 ggcaaaacatcagatattttcgaaagtgaatcctccacatg 280
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ggcaaaacatcagatattttcgaaagtgaatcctccacatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 677
Length adjustment: 9
Effective length of query: 271
Effective length of database: 668
Effective search space:   181028
Effective search space used:   181028
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)