NATCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCAGTGGACTAGGAATACCAGAGGAAAAAATGGAAAGAGAAA
GCCTAAGAAGGAGCCAAAGATATGGTTATTTTATAAGTATTCAAAGAATC
GTATTATTTAAAAACAAAATTAGTTATAGTAACTAAGGATAAAGTCCATA
TTCTTCTCTCAGTTTTCCAGAAGTTCATTCAAAAAAGTAAAGAGTTATGT
GACTAACTATCCAAAAGCTGAGAGGGGATGCTCTTTCTTCACATACTCTT
CATGTGCCCTTCTTGTTCATTTTGCTTTCAAATCACGGCAGTTTCACAAA
CAGTTTTTCGTCCAGACAAATGGTACTACTACTAATAAGAAGCCTCCATA
TGCACTGGAAGACATGGAAACATGATAAATGAGATAATCAAACGTGACAA
AATGTAATTTACTTTAGTGATGAACTGTAAGTTGCTATTATCATCCAGGA
GAATACCTTCTTTTTCTCTACTAGGAATAAATAGGAGTTATTTCATAAAA
GTATTACTGAAAGGAACTCATAAAGTGAATATGATGTTTAACGTGCTTAT
TAGTCTGGATATTATTTCCACTAAGACTGCATTCATTATTTACATAAAGA
AACCCAGTGTTTAGAAATTGATTTGCAATCTGCAGTTTCACCAGAAGATG
GCAGAGTGGTGTCAAAATTCCAATGTGAG

NTCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTGATGTCTATGGTCAGTA
CTGCTGCTGGTTGTTATGGGCAAGAATGCTTTTGTTGTAATAGTGTTCAT
GACTCCAGACTCAGAATTAAGAATGGAAGATACTGAAGACTTCTTTGACA
CCACACACACATACACACTAAAAGAAATAGTCTAGACAGGAAGCCATGGA
AGGGTCCTTAAAATTGTGATAAAGATGATGAAATACAGCACTTCATAGTG
ATGGCTTGTGGTGCAGGGATGGAAAATGACTCATTTATCGTTAAGAGGAC
AGCTATATGGTTATATACAAATTGCACTGCATAAACAAACACACACACAC
ACACACACACACACACACACACACACAAATTTGTCAGGAAGGTCACAAGC
TAGGGAAGGTGGACCTGGAAGGAAAGGAAATGAGTATGATTGAGATACAT
TGTATGGAATTTTAAAATGAGCAATAAAAAGATATGTCTTAGCTTCTGTT
ATATTGCTGTAAAGAGACACTGTGGCTATGCCAACTCTTGAAAAGGAAAA
TACTTAGTTTAGGCTGGCTTACAGTTTCAAAGGTTTAGTCCATATGGCAG
CATACAGGCAGACATTGTGCTGGAGGAGCTGAGAGATCAACATCTTTATA
TATATATGTGTGTGTGTGTGTGTGGG

Query= MSMg01no163_l09.b1 MSMg01no163_l09.b1 CHROMAT_FILE:
MSMg01no163_l09.b1 PHD_FILE: MSMg01no163_l09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:31:22 2005
         (674 letters)



>mm_chr4_19879114_19880191
          Length = 1078

 Score = 1110 bits (574), Expect = 0.0
 Identities = 649/676 (96%), Gaps = 8/676 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagtggactaggaataccagaggaaaaaatggaaagagaaagcctaagaaggagc 64
           ||||||||||||||||||||||  ||||||||||||||||||||| ||||||||||||| 
Sbjct: 878 gaattcagtggactaggaatactggaggaaaaaatggaaagagaaggcctaagaaggaga 819

                                                                       
Query: 65  caaagatatggttattttataagtattca----aagaatcgtattatttaaaaacaaaat 120
           |||||||||||||||||||||| ||||||    |||||| ||||||||| ||||||||| 
Sbjct: 818 caaagatatggttattttataaatattcaaagtaagaattgtattatttcaaaacaaaaa 759

                                                                       
Query: 121 tagttatagtaactaaggataaagtccatattcttctctcagttttccagaagttcattc 180
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 758 tatttatagtaactaaggataaagtccatattcttctctcagttttccagaagttcattc 699

                                                                       
Query: 181 aaaaaagtaaagagttatgtgactaactatccaaaagctgagagggga-tgctctttctt 239
           |||||||||||||| |  ||||||| ||||||||||||||||| |||| |||||||| ||
Sbjct: 698 aaaaaagtaaagaggtgcgtgactatctatccaaaagctgaga-gggagtgctctttttt 640

                                                                       
Query: 240 cacatactcttcatgtgcccttcttgttcattttgctttcaaatcacggcagtttcacaa 299
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 639 cacatactcttcatgtgcccttcttgttcattctgctttcaaatcacggcagtttcacaa 580

                                                                       
Query: 300 acagtttttcgtccagacaaatggtactactactaataagaagcctccatatgcactgga 359
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 acagtttttcttccagacaaatggtactactactaataagaagcctccatatgcactgga 520

                                                                       
Query: 360 agacatggaaacatgataaatgagataatcaaacgtgacaaaatgtaatttactttagtg 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 agacatggaaacatgataaatgagataatcaaacgtgacaaaatgtaatttactttagtg 460

                                                                       
Query: 420 atgaactgtaagttgctattatcatccaggagaataccttctttttctctactaggaata 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 atgaactgtaagttgctattatcatccaggagaataccttctttttctctactaggaata 400

                                                                       
Query: 480 aataggagttatttcataaaagtattactgaaaggaactcataaagtgaatatgatgttt 539
           ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct: 399 aataggagttatttcataaaaatattactgaaaggaactcatgaagtgaatatgatgttt 340

                                                                       
Query: 540 aacgtgcttattagtctggatattatttccactaagactgcattcat-tatttacataaa 598
           ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 339 aacgtgcttattagtctggatattatttccactaagactgcattc-tctatttacataaa 281

                                                                       
Query: 599 gaaacccagtgtttagaaattgatttgcaatctgcagtttcaccagaagatggcagagtg 658
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 gaaacccagtgtttagaaattgatttgcaatctgcagtttcaccagaagatggcagagtg 221

                           
Query: 659 gtgtcaaaattccaat 674
            |||||||||||||||
Sbjct: 220 atgtcaaaattccaat 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 674
Length of database: 1078
Length adjustment: 10
Effective length of query: 664
Effective length of database: 1068
Effective search space:   709152
Effective search space used:   709152
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)