BAC Information

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BAC

Clone NameMSMg01-163O11
Chromosome4 (Build37)
Map Location 66,675,177 - 66,675,495
singlet/doubletsinglet
Overlap genenone
Upstream geneAstn2, LOC667499, Tlr4
Downstream geneLOC100039379, Hmgb1-rs18, LOC433715
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-163O11.T7 (MSMg01no163_o11.b1)MSMg01-163O11.TJ (MSMg01no163_o11.g1)
ACCAG362558AG362559
length721730
length of high quality
(start - end)
322 (47 - 368)574 (78 - 651)
definitionCHROMAT_FILE: MSMg01no163_o11.b1 PHD_FILE: MSMg01no163_o11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:31:36 2005CHROMAT_FILE: MSMg01no163_o11.g1 PHD_FILE: MSMg01no163_o11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:31:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCCTACTCCTTTCCATGTATGTTTTTATCTCTCCACGAAATGTCT
TCCAGAGCTTTGACGCTCATTGTTTATCGGGTTCTCTAGGCTAGAAGGGT
CTAATGCTGAAAGGATTGCATGAATTTGGACATAGAATGTCTCAAAAAAT
ATCTAATTTTCCACTGAGAGGGAAATTTAACGCTGATCATCATAGATGTT
CATTTTAGCTGTTAGGTAATATGTTAATTGTCCTGATGCATCAATCTGAG
GTAACTAGAGATGGGGTTTTATAAGATTATTCTGAATCTCACTCTTTTGC
AAATCTAAGATTTTCAAATTTACGTATATCCAAATAAGAATATTTATTTT
AAAAGATCTAGTCCAGCAATTTGTTTTAATAATTATTTTTTTGTATGTGC
TCTTTGTCTGCATGTATGTGTAGTGCATGTATGTAGTGCCCTTGGCAGCC
ATAATAAGACATCAGATCCTGTCAAACAGGTGGCGTACTATTATGTGGTT
GTTGGAATCTGAACTCAGTTCCTCTGCAAAAGCAACAAGAAATGGCTCTA
TAACCTCTGAGCCATTCCTGCCTCCCTCCTTTGTCTGTCTCTCTCTTCAT
CAGTCTCTGTCTTTCTGTGTGTGTTTGTGTTAATGTTTGTGTGTGTGAGT
ATATGTGTGTCTCCTTTTCCT
ACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAAGTCCCATATCTAAACATACTA
AAAGCAAAATACAGCAAACCAGTAGCTCAACATCAAAATAAATCTAGAGA
AACTTGAAGCATTCCCAATAAAATCAGGGACTAGACAAGACTGATCTCTC
TCTCTCGCCCTGTCAATTCAATGTAGTACTCAAAGTTCCAGGCAGAGCAA
CTAGACAACAAAAGGAGGTCAAAGGGATACAAATTGGAAAGCGAGAAGTG
AAAATATCACAATTTGCAGATGATATGATAGTATACTTAAGTGACACTAA
AAAATTCCTCAAAAGAACTCCAAAATGTGCTAAACAACTTCAGCAAAGTG
GCTGGATATAAAATTAACTCAAGACCAAGGGGCCTCTATTCCCAAAGATG
GCTGACTAGGCCATCTTCTGATACATATGCAGCTAGAGACAGGAGCTCTG
GGAGCACTGGTTAGTTCATATTGTTGTTCTACCTATAGGGTTGCAGACCC
CTTCATCTCCTTGGGTACTTCCTCTAGCTCCTCCATTGTGGGCCCTGTGT
TCCATCCAATAGATGACTGTGAGCATCCACTTCTGTATTTTTCAGGCACT
AATAGGGAAGTTGGGGNTGGNNNNACANNNNANANGNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no163_o11.b1 MSMg01no163_o11.b1 CHROMAT_FILE:
MSMg01no163_o11.b1 PHD_FILE: MSMg01no163_o11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:31:36 2005
         (322 letters)



>mm_chr4_66674974_66675695
          Length = 722

 Score =  609 bits (315), Expect = e-179
 Identities = 318/319 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccctactcctttccatgtatgtttttatctctccacgaaatgtcttccagagct 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccctactcctttccatgtatgtttttatctctccacgaaatgtcttccagagct 263

                                                                       
Query: 64  ttgacgctcattgtttatcgggttctctaggctagaagggtctaatgctgaaaggattgc 123
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ttgacgctcattgtttattgggttctctaggctagaagggtctaatgctgaaaggattgc 323

                                                                       
Query: 124 atgaatttggacatagaatgtctcaaaaaatatctaattttccactgagagggaaattta 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 atgaatttggacatagaatgtctcaaaaaatatctaattttccactgagagggaaattta 383

                                                                       
Query: 184 acgctgatcatcatagatgttcattttagctgttaggtaatatgttaattgtcctgatgc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 acgctgatcatcatagatgttcattttagctgttaggtaatatgttaattgtcctgatgc 443

                                                                       
Query: 244 atcaatctgaggtaactagagatggggttttataagattattctgaatctcactcttttg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 atcaatctgaggtaactagagatggggttttataagattattctgaatctcactcttttg 503

                              
Query: 304 caaatctaagattttcaaa 322
           |||||||||||||||||||
Sbjct: 504 caaatctaagattttcaaa 522


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 722
Length adjustment: 9
Effective length of query: 313
Effective length of database: 713
Effective search space:   223169
Effective search space used:   223169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)