BAC Information

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BAC

Clone NameMSMg01-164B10
Chromosome4 (Build37)
Map Location 51,044,456 - 51,044,811
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666663, LOC100040979
Downstream geneLOC666681, LOC100040814, LOC384015
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-164B10.T7 (MSMg01no164_b10.b1)MSMg01-164B10.TJ (MSMg01no164_b10.g1)
ACCAG362683AG362684
length831721
length of high quality
(start - end)
78 (64 - 141)501 (77 - 577)
definitionCHROMAT_FILE: MSMg01no164_b10.b1 PHD_FILE: MSMg01no164_b10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:31:50 2005CHROMAT_FILE: MSMg01no164_b10.g1 PHD_FILE: MSMg01no164_b10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:31:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTCTCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCACATACAGTGTTTTAATGGCTGGTCTTGGTTGATTTAGGA
AGAAAGTTTTTTGTTTGTTTGTTTGTTTGCGTGTGTGTGTGTGTGTATGC
CCCTCTCCCCTTTACCACCCCCATACTTTATTCCCAAAAACCTCCTACTA
TTCCCCCAAATCCCTTCTTCACCTTTTTTATAATCCACCCTTCTAACCTA
TCCCATACTTTTTTTTCACCCTTACTTTCCTCTTTCATCCCCCTTTTTCT
TTTCCATCAACTATCTAACCCCCCTTCCCCAATTCCCTTTTTCTTATATC
CCCCCACTTTCACCTAAAATCCCTTCCCTACCCTTTTCAATAATTCCCCC
CCAACGACACCCCCAAATATTCCTCAATAATTTATTTTCTTTTTTCTTTC
CCCCCCCCCATAAAAAAAAAAAAAACCCCTCCTTTCTCCCCCCCTCTTTT
CTCCCCCTCCCTTTTTTATTTATTCCCCTCTTTTCACTTCCCCCCCCAAC
CCTTTTATTTATTCCCCCCCTCTTCCCTTCTTTTTCCTTTTTTATTTCCT
TTTATCCCCATATACCTATTTCCATTTTACCCCCTTTTTCTTTTAACCAT
ACCCTCTACCTCTCCCTCCCTCTAAGTCCCCATATCCTCACCTTCCTCTT
TACTCTACCTCACCTTCCCCCCTTTATTCCCACCCTAAACCTTTTTCCAC
CTCTCTCTATATTCATAACCTTCTCTTCACAACCTTTTTTCTATTCACCC
TTTATCCCCAATAACTCAACATACTCCCTTC
TCACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTAGGGAAGAAGAGCTGAAAGTGT
AAGTTCCAGGAGGACACCAAGAAAAGACAGCCCTCTGAATCAGCATGGCT
GAAGCTTTTGAACTCAGAGGAACTGAGGCAGAGTGCACAGGGTCTGCAAG
AGGAATGCACCGGGTCCTCTATATATTAGTGATTTCAGGTTAGTGTGTTT
ATATGAGATTTCTGAGAGGGCAAACAAAAGAGTCTCTGTTTTTCGGTTGG
TTGGTTGGTTGGTTGGCTGGTTTGTCATCCCCCTCACTCCTTTTTTGGAT
CCTTTTCTTCAGTTGGTTTGTTCAGCCCAACTCTGAAGTGGTCTCTTGCT
TTGTCTTATTATATTTTCTATCCGCATATTTAAACATGAGTAAATGAAAA
CCTAGCCACGTGGTAAAGATTGATCCCTGAACTGTCACTTATACCTTCAG
AGAGAGAGAGAGAAATCACTTTTTTCCCCAATAGAGTAACACTAATATAT
CATACACTCCAGGAAAGACTTCCTGCTTAAGAATATTTTACTCACATATA
TCGGAATCAACAAGATAGCTAAACCCCTAAACAAACTAAATAAAGGGTCT
AGAGTCTTTACATATTTTACCATAATCCGAAATGAATAGGGAGACTCAAA
AATCGATTATGAGGACATTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no164_b10.g1 MSMg01no164_b10.g1 CHROMAT_FILE:
MSMg01no164_b10.g1 PHD_FILE: MSMg01no164_b10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:31:50 2005
         (501 letters)



>mm_chr4_51043907_51044811
          Length = 905

 Score =  609 bits (315), Expect = e-178
 Identities = 345/357 (96%), Gaps = 6/357 (1%)
 Strand = Plus / Minus

                                                                       
Query: 150 ttagtgatttcaggttagtgtgtttatatgagatttctgagagggcaaacaaaagagtct 209
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 905 ttagtgatttcaggttagtgtgtttatatgagatttctgagagggcaaacaaaagagtct 846

                                                                       
Query: 210 ctgtttttcggttggttggttggttggttggctggtttgtcatccccctcactccttttt 269
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 845 ctgtttttcggttggttggttggttggttggctggtttgtcatccccctcactccttttt 786

                                                                       
Query: 270 tggatccttttcttcagttggtttgttcagcccaactctgaagtggtctcttgctttgtc 329
           ||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct: 785 tggatccttttcttcagttggtttgtttagtccaactctgaagtggtctcttgctttgtc 726

                                                                       
Query: 330 ttattatattttctatccg-catatttaaacatgagtaaatgaaaacctagccacgtggt 388
           ||||||||||||||||  |  |||||||||||||||||||||||||||||||||||||||
Sbjct: 725 ttattatattttctat-tgttatatttaaacatgagtaaatgaaaacctagccacgtggt 667

                                                                       
Query: 389 aaagattgatccctgaactgtcacttataccttc----agagagagagagagaaatcact 444
           ||||||| ||||||||||||||||||||||||||    ||||||||||||||||||||||
Sbjct: 666 aaagattaatccctgaactgtcacttataccttcagagagagagagagagagaaatcact 607

                                                                    
Query: 445 tttttccccaatagagtaacactaatatatcatacactccaggaaagacttcctgct 501
           |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 606 tttttccccaatagagtaacactaatatatcaaacactccaggaaagacttcctgct 550


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 905
Length adjustment: 10
Effective length of query: 491
Effective length of database: 895
Effective search space:   439445
Effective search space used:   439445
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)