ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCTCCTTTGCATCTCTTATGTGTTTATGAAGGTAGAAGTGCTTCAAG
TCATTGTTGTTCCAATTGTAAAGCAAATTAGTCCAACAGTAGCTAGATAT
TAACTCAGCCAACCTTGAAAGGACATGGGAATCCTGGTGGGATAAAGGGG
CCAGGTACCTATTTCAACTCAGTTGCTTCTTGGATGGCTACAGCATGAGT
ATATTACTTGCTGATGGCCTTTTGATGTGAATCACTGCACAGATGTCTGC
GAGAGTGGCCATTCAAGCTATGCCTTCATCTCTTCTTGTTTTGATATGCT
TCGTTTCAACAAATTCTGAAACTGGGCTTGCCAGGACTGCATTACTGGAG
CTTTAAAAGTTGGACCACACTCTGTGGCAGTCAAAAGTGTGACTTAAAAG
TACCGACTTTGAAAGTCTGTAAGGGCTAGCACCTCTAGCCCTCCTTGTAG
TGTGTATGAATTAATGCAGTATTTCATCCCTACCATCAGTCTATCTTCAT
GTGAACCAGGACAACAGATGGGAGAAAAGCAGAACAGAATTACTGTCCAT
TGAAAGCATCGTATTTAAAGACTCTATTTTTGTAATAACGAAATGGCCAC
CTGATTATTAAAATCCAGCGTCATTATAGTCAGATTTGAATTATATCTGT
AGAATTTTCATAGCATATCCTTCCTTTATTTCTTCCAT

ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCAATTTGAGGAATCTCAAATGGCTGA
AAAGCACCTAAAGAAATGTTCAACATAATTAGTCATCAGTGAAATGAAAA
TCAAAATAACCCTGAGATTCCACCTCACACCAATCAGAATGACTAAGATT
AAAAACACAGGTAACAGCAGATGCTGGCGAGTGGGGAGAAAGAGGAACAC
TCCTCAATTGCTGGTGGGATTTTAAGCTGCTAAAACTACTTTGGAAAACA
ATCTGTTCCTCAGAAAACTGGAAATTCTTCTACATGAAGACCCAGCTATA
ACCACTACTAGGCATATACCCCAAAGACCGCCCAATGTATAACAAGGACA
CATACTCTAGTATGTTTGGAATAGACTTATTTATAATAACCAGGAGCTGG
AAACAACCAAGATGTCCTTCAATGGAAGAATGAATACAGAAAATGTGATA
CATTTACACAATGAAGTAGTACTCAGCTATTTAAAACAATGACTTCATGA
AATTCACAGGCAATGGATGGAACTAGAAAATATCATTCTGAGATAACCCA
GACACAAAAGGACACATGTGGTATATACTCATAGTAAATGGATATTACCC
CAAAAGCTCAGAATATCCATGATAGAACTGACAGATCATATGAAGCTTTG
AAGGAAAAACAAATTGTGGATGCTTCAATCCTTCTTAGAAGGG

Query= MSMg01no164_d17.b1 MSMg01no164_d17.b1 CHROMAT_FILE:
MSMg01no164_d17.b1 PHD_FILE: MSMg01no164_d17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:32:01 2005
         (693 letters)



>mm_chr4_36025676_36026768
          Length = 1093

 Score = 1295 bits (670), Expect = 0.0
 Identities = 685/690 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctctcctttgcatctcttatgtgtttatgaaggtagaagtgcttcaagtcattg 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 893 ggaattctctcctttgcatctcttatgtgtttatgaaggtagaagtgcttcaagtcattg 834

                                                                       
Query: 64  ttgttccaattgtaaagcaaattagtccaacagtagctagatattaactcagccaacctt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 833 ttgttccaattgtaaagcaaattagtccaacagtagctagatattaactcagccaacctt 774

                                                                       
Query: 124 gaaaggacatgggaatcctggtgggataaaggggccaggtacctatttcaactcagttgc 183
           ||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct: 773 gaaaggacatgggaatcctggtgggataaaggggccaagtacctgtttcaactcagttgc 714

                                                                       
Query: 184 ttcttggatggctacagcatgagtatattacttgctgatggccttttgatgtgaatcact 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 ttcttggatggctacagcatgagtatattacttgctgatggccttttgatgtgaatcact 654

                                                                       
Query: 244 gcacagatgtctgcgagagtggccattcaagctatgccttcatctcttcttgttttgata 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 gcacagatgtctgcgagagtggccattcaagctatgccttcatctcttcttgttttgata 594

                                                                       
Query: 304 tgcttcgtttcaacaaattctgaaactgggcttgccaggactgcattactggagctttaa 363
           |||||||||||||||||  ||||||||||| |||||||||||||||||||||||||||||
Sbjct: 593 tgcttcgtttcaacaaagcctgaaactgggtttgccaggactgcattactggagctttaa 534

                                                                       
Query: 364 aagttggaccacactctgtggcagtcaaaagtgtgacttaaaagtaccgactttgaaagt 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 aagttggaccacactctgtggcagtcaaaagtgtgacttaaaagtaccgactttgaaagt 474

                                                                       
Query: 424 ctgtaagggctagcacctctagccctccttgtagtgtgtatgaattaatgcagtatttca 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 ctgtaagggctagcacctctagccctccttgtagtgtgtatgaattaatgcagtatttca 414

                                                                       
Query: 484 tccctaccatcagtctatcttcatgtgaaccaggacaacagatgggagaaaagcagaaca 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 tccctaccatcagtctatcttcatgtgaaccaggacaacagatgggagaaaagcagaaca 354

                                                                       
Query: 544 gaattactgtccattgaaagcatcgtatttaaagactctatttttgtaataacgaaatgg 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 gaattactgtccattgaaagcatcgtatttaaagactctatttttgtaataacgaaatgg 294

                                                                       
Query: 604 ccacctgattattaaaatccagcgtcattatagtcagatttgaattatatctgtagaatt 663
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 ccacctgattattaaaatccagcgtcattatagtcagatttgaattatatctgtagaatt 234

                                         
Query: 664 ttcatagcatatccttcctttatttcttcc 693
           ||||||||||||||||||||||||||||||
Sbjct: 233 ttcatagcatatccttcctttatttcttcc 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 693
Length of database: 1093
Length adjustment: 10
Effective length of query: 683
Effective length of database: 1083
Effective search space:   739689
Effective search space used:   739689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)