BAC Information

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BAC

Clone NameMSMg01-164K13
Chromosome4 (Build37)
Map Location 77,402,981 - 77,403,290
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667858, LOC667862
Downstream geneLOC100039974, LOC100039996
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-164K13.T7 (MSMg01no164_k13.b1)MSMg01-164K13.TJ (MSMg01no164_k13.g1)
ACCAG363066AG363067
length749771
length of high quality
(start - end)
314 (45 - 358)178 (71 - 248)
definitionCHROMAT_FILE: MSMg01no164_k13.b1 PHD_FILE: MSMg01no164_k13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:32:34 2005CHROMAT_FILE: MSMg01no164_k13.g1 PHD_FILE: MSMg01no164_k13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:32:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATAGAGAATGAATTACATAAAAATAAACTATTTTCAGGTTTTATTA
TGTATGGGTCAAAGCACCTTATTAACTTTGCTTTCGGTTTATTAAACACA
TAAAGACTTCTTATTTCAAGTAGGTAATAGAACGGCTAGAGGACTAACTG
TCCCTACACACAGCTGTGAAAGTACTTTCACTCTCACTGATATATTTTGT
CTTGTTTCTAAGTTGTGTCTTTGTTCTTACGATGTTAAGTAACAAATTCA
CTCTAAGTAAAATTCAGGAAAATATAAACATTATTACATCTTAACCTTCA
TCAAAAAGCACTTTATCTGACCCCCCCCCTAATATGTTCTTCCAATTAAT
TTTTATTCTTATCCCTAGTATATATTTTGTGTGATTCAAAAAGCACTGAT
CAAGAGCTTTTATATATGAGGAAGTATCTAATTAACTCTTTATAAATGAC
TTAAAGAATAGAAACCTAATAGACAAATAAGCATGAAGAGAAAGAAAATA
TCCATAAAATGTTTTAAAAATGTGACAGGATGATAAGGAAATAGGAATGC
TAGTCACAGTGTAACAAGATCAGCAGTTGAAACATCACTAAACAGGTTTC
AGCAAATCTCACTATTTAGGTCAACTGAGTATATTTCCTGAGAGGTAAAA
GACATTCTCCTAATAGAAGAAACTATATTATGAACCCCTAAAGATTTTN
AAGGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCAGTCCTGACTTCCTTGGTGATGAACAGCA
GTCAGTATGGAAGTGTAAGCTGAATAAACCCTTTCTTCCCCAACTTGCTT
CTTGATCATGATGTTTTGTCCAGGTCTAGAAACCCTGACTAAAACAAATT
GGTACCAAAGGTGGGGTATTACTGTGACAACCTGACAATGTTTTCTGGAG
GACTGTGGAAGACTTTGTAACTGTGGGCCAAAAGTTCCATTAGGTGTTAA
GAGCTTTGTGAGACATTGTTTATGAGCTTGGAAGATAATGTTGAGAACAG
TGCAAAATTTGTATTCCCCCCCCCCCCCATTTCAAAGGGAAGATTAAAGA
TCCTTTTCAGGCCCATTGCTATTTAAATAGTAAAAATTCTCTGGTTCTGG
TTAACTGGGTCTGAAAAATCATCTGTGATTAACAAGATCCCAGAATTATT
AAAGTGAAACCTTTATATAACTGGACTATTGATGCTGATTATATGAAGCT
GTTTCTAGCTGCATATGTCTCCAAAAGATGTTCCAACTCTCCTATTTTTC
CTTAATAATATCTCCATCTCCCTTTCTCTTTTTTTCTTTACCCTTTTTTA
TATACAAATTAATATTCTCTATTAATTTACTTTTACTCTTATATTAATTA
TTTTTCCACCACAATAACACAAATACACACTACATACCTTATATTAAAAT
TACTCACTCTAATTATACCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no164_k13.b1 MSMg01no164_k13.b1 CHROMAT_FILE:
MSMg01no164_k13.b1 PHD_FILE: MSMg01no164_k13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:32:34 2005
         (314 letters)



>mm_chr4_77402777_77403490
          Length = 714

 Score =  561 bits (290), Expect = e-164
 Identities = 305/310 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatagagaatgaattacataaaaataaactattttcaggttttattatgtatggg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 514 gaattcatagagaatgaattacataaaaataaactattttcaggttttattatctatggg 455

                                                                       
Query: 65  tcaaagcaccttattaactttgctttcggtttattaaacacataaagacttcttatttca 124
           |||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 454 tcaaggcaccttattaactttgcttttggtttattaaacacataaagacttcttatttca 395

                                                                       
Query: 125 agtaggtaatagaacggctagaggactaactgtccctacacacagctgtgaaagtacttt 184
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 agtaggtaatagaatggctagaggactaactgtccctacacacagctgtgaaagtacttt 335

                                                                       
Query: 185 cactctcactgatatattttgtcttgtttctaagttgtgtctttgttcttacgatgttaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 cactctcactgatatattttgtcttgtttctaagttgtgtctttgttcttacgatgttaa 275

                                                                       
Query: 245 gtaacaaattcactctaagtaaaattcaggaaaatataaacattattacatcttaacctt 304
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 274 gtaacaaattcactctaagtaaaattcaggaaaatataaacattatttcatcttaacctt 215

                     
Query: 305 catcaaaaag 314
           ||||||||||
Sbjct: 214 catcaaaaag 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space:   215025
Effective search space used:   215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)