Query= MSMg01no164_p04.b1 MSMg01no164_p04.b1 CHROMAT_FILE:
MSMg01no164_p04.b1 PHD_FILE: MSMg01no164_p04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:32:56 2005
(321 letters)
>mm_chr4_34566704_34567424
Length = 721
Score = 445 bits (230), Expect = e-129
Identities = 284/316 (89%), Gaps = 24/316 (7%)
Strand = Plus / Plus
Query: 5 gaattccaggacagccagagctgtgtaaaggcctgtctcaaaaaagaaaaaaaaaaagga 64
|||||||||||||| ||||||||||||||||||||||||||||||| ||||| |
Sbjct: 229 gaattccaggacagtcagagctgtgtaaaggcctgtctcaaaaaaggaaaaa-------a 281
Query: 65 aaaaaaaaaaaaaaggaagaagaggaagaagaaaagaagaaattaagagaaagaaaaaag 124
|||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 282 aaaaaaaaaaaaaaggaagaag-----------aagaagaaattaagagaaagaaaaaag 330
Query: 125 aaaaaaaaagtagaaggcctactttaaagaaatctgtatgtcaattactgagcgccacca 184
|||| ||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct: 331 ------aaagaagaaggcctgctttaaagaaatctgtatgtcaattactgagcgctacca 384
Query: 185 ctgtgtgcatagggccagtcctcagcattggattgtgttgtaaatactagatttcaaagt 244
||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 385 ctgtgtgcatagggctagtcctcagcattggattgtgttgtaactactagatttcaaagt 444
Query: 245 atagctagtacatcttttaaaagacttgtttttcccactaatttactgtttaaaacaaaa 304
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 atagctattacatcttttaaaagacttgtttttcccactaatttactgtttaaaacaaaa 504
Query: 305 gtgtaccaggcagtct 320
||||||||||||||||
Sbjct: 505 gtgtaccaggcagtct 520
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space: 222144
Effective search space used: 222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no164_p04.g1 MSMg01no164_p04.g1 CHROMAT_FILE:
MSMg01no164_p04.g1 PHD_FILE: MSMg01no164_p04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:32:56 2005
(339 letters)
>mm_chr4_34720785_34721523
Length = 739
Score = 648 bits (335), Expect = 0.0
Identities = 338/339 (99%)
Strand = Plus / Minus
Query: 1 tgtacaaagcaccagtacctgagtaggaatgtttaaatcttcataacatttactgcgcat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 tgtacaaagcaccagtacctgagtaggaatgtttaaatcttcataacatttactgcgcat 480
Query: 61 gaagctgcagtctttcccctgtgtggttaacttgagtctctggggacattgctttctcta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 gaagctgcagtctttcccctgtgtggttaacttgagtctctggggacattgctttctcta 420
Query: 121 cttccctgcattatgtggtggaaatgatacctggaagcaaaaacgaaccagaagacaaaa 180
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 419 cttccctgcattatgtggtggaaatgatacctggaagcaaaaccgaaccagaagacaaaa 360
Query: 181 gacacatttgggtttaactagatagagaagtgtttagattaaggaggtagcaggtcctgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 gacacatttgggtttaactagatagagaagtgtttagattaaggaggtagcaggtcctgt 300
Query: 241 cctcatttggagggtgccgactgggctgagaacaggtagaaatggctgccattggacagg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 cctcatttggagggtgccgactgggctgagaacaggtagaaatggctgccattggacagg 240
Query: 301 ggagggcttcagactttgggggtcatgaaggataacaga 339
|||||||||||||||||||||||||||||||||||||||
Sbjct: 239 ggagggcttcagactttgggggtcatgaaggataacaga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 739
Length adjustment: 9
Effective length of query: 330
Effective length of database: 730
Effective search space: 240900
Effective search space used: 240900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
