BAC Information

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BAC

Clone NameMSMg01-165C11
Chromosome4 (Build37)
Map Location 12,344,166 - 12,344,714
singlet/doubletsinglet
Overlap genenone
Upstream gene1110037F02Rik, LOC100039847, E130016E03Rik, LOC100039862, Gem, Cdh17, Ppm2c, Tmem67, C430048L16Rik, LOC230010, LOC623671, LOC100039958, Rbm12b, 6720467C03Rik, LOC545592
Downstream geneOTTMUSG00000004461
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-165C11.T7 (MSMg01no165_c11.b1)MSMg01-165C11.TJ (MSMg01no165_c11.g1)
ACCAG363398AG363399
length743737
length of high quality
(start - end)
702 (42 - 743)624 (68 - 691)
definitionCHROMAT_FILE: MSMg01no165_c11.b1 PHD_FILE: MSMg01no165_c11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:33:12 2005CHROMAT_FILE: MSMg01no165_c11.g1 PHD_FILE: MSMg01no165_c11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:33:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATGCGCGGAATTC
AGGAAGACTGCAGCAAAGATGTCCATGTTGGGAGTGAGGAATGGAGCAAG
GATGGTGGGAGAAACAGGCAAACACCGTCTCTGAGGCAACATTAGACAGT
CTGGATTTTCTTCTGAAAGTAATAGGGACATTTCTGAAAGTAATAGCCAG
AGAATACATAAAGATTTCCTCAAGCTATTTTATCTTTTACCTATGATCTT
CAGAGACATTATGGAGAACTAGGGGCTTATACCTATCTAGAGAATGGGCT
GTACAAAAAGAGCTCTGTTGGCCTTTCTCTAAGCCCCTTCTTGGATTGTT
CCTTTTCAATGTATTTATAAAGATTTAGGGAAATTAACTCATTAGCTACT
TTTCTCATTGCTGCGACACATTACCCAACAAAAGCAACTTTAGGAAAGAT
GGGTTTCTTTTGGCTCATGGTTTAAAGATACAGCATGTTGCAGAGGACAA
GAGCATGAGGTGGCAGGTCACATTGTGTCCATGGTAGGGAAATGGAGAAA
GTAATGCTGGCACTCACCTCCCTTTCTCACATTTTTATTCAGTCTGGCAT
CCCAGCAGATGGAATAGTGCTACCTACATTCAAGATGTTTTCCCTCATCA
GTTAAAGCTTCCTGGAAACATCCTCAAGACAAACCCAGAGGAATTCCCAT
GGTGGTTCTAAGTCCAATGAATTTGCCACTGAAGATTACTCAT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXAGAGTTGTAGAGAGCTGAGTTTGAATACTAGCC
AGCATTATTTTAAGTGAGTCCTTTAACTTTTTTTTTAATTAGATATTTTC
TTTATATACATTTCAAATGCTATCCTGAAAGTTCCCTATACCCTCCCTCT
GCCCTGCTCCCTTACCCACCCACTGCCGCTTCTTGGCCCTGGCATTCCCC
TGTACTGGGGCATATAAAGTTTGCAATACTAAGGGGCCTCTCTTCCCAGT
GATGACCGACTAGGCCATCTTCTGCTCCATATGCAGCTAGAGATATACGC
TCTGGGGGGTACTGGTTAGTTCATATTGTTGTTCCACCTATAGGGTTGCA
GACCCCTTCACCTCCTTGGGTGCTTTCTCTAGCTTCTCTATTGGGGACCC
TGTGTTCCGTCTTATAGATGACTGTGAGCATCCACTTCTGTATTTGCCAG
ACACTGGCATACGAGACAGCTATGACAGGGTCCCTTCAGCAAAATCTTTC
TGGCATTATTATGCAATAATGTCTGATTTTGGTGGCTGATTATGGGATGG
ATCCCCAAATGGGGTAGTAAATAACCCCATTAAAAATGGGGCTCAGAGCT
AAACAAAGAATTCTCAACTGAGGAATATCGAATGGCTGAGAAGCACCTGA
TAAAATGTTCAACATCCTTAATTATCAAGGACATGCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no165_c11.b1 MSMg01no165_c11.b1 CHROMAT_FILE:
MSMg01no165_c11.b1 PHD_FILE: MSMg01no165_c11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:33:12 2005
         (702 letters)



>mm_chr4_12344166_12345267
          Length = 1102

 Score = 1038 bits (537), Expect = 0.0
 Identities = 546/549 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   gaattcaggaagactgcagcaaagatgtccatgttgggagtgaggaatggagcaaggatg 63
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 gaattcaggaagactggagcaaagatgtccatgttgggagtgaggaatggagcaaggatg 490

                                                                       
Query: 64  gtgggagaaacaggcaaacaccgtctctgaggcaacattagacagtctggattttcttct 123
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 489 gtgggagaaacaggcaaacaccatctctgaggcaacattagacagtctggattttcttct 430

                                                                       
Query: 124 gaaagtaatagggacatttctgaaagtaatagccagagaatacataaagatttcctcaag 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 gaaagtaatagggacatttctgaaagtaatagccagagaatacataaagatttcctcaag 370

                                                                       
Query: 184 ctattttatcttttacctatgatcttcagagacattatggagaactaggggcttatacct 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 ctattttatcttttacctatgatcttcagagacattatggagaactaggggcttatacct 310

                                                                       
Query: 244 atctagagaatgggctgtacaaaaagagctctgttggcctttctctaagccccttcttgg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 atctagagaatgggctgtacaaaaagagctctgttggcctttctctaagccccttcttgg 250

                                                                       
Query: 304 attgttccttttcaatgtatttataaagatttagggaaattaactcattagctacttttc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 attgttccttttcaatgtatttataaagatttagggaaattaactcattagctacttttc 190

                                                                       
Query: 364 tcattgctgcgacacattacccaacaaaagcaactttaggaaagatgggtttcttttggc 423
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 tcattgctgtgacacattacccaacaaaagcaactttaggaaagatgggtttcttttggc 130

                                                                       
Query: 424 tcatggtttaaagatacagcatgttgcagaggacaagagcatgaggtggcaggtcacatt 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 tcatggtttaaagatacagcatgttgcagaggacaagagcatgaggtggcaggtcacatt 70

                                                                       
Query: 484 gtgtccatggtagggaaatggagaaagtaatgctggcactcacctccctttctcacattt 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69  gtgtccatggtagggaaatggagaaagtaatgctggcactcacctccctttctcacattt 10

                    
Query: 544 ttattcagt 552
           |||||||||
Sbjct: 9   ttattcagt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 702
Length of database: 1102
Length adjustment: 10
Effective length of query: 692
Effective length of database: 1092
Effective search space:   755664
Effective search space used:   755664
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)